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BioLiP Library
Download all results in tab-seperated text for 122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7rf3:A (2.26) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 34764256
    2 7rf3:A (2.26) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 34764256
    3 7rf3:A (2.26) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 34764256
    4 7rf3:A (2.26) BS04 PHO 1.10.3.9 GO:0005506 ... P0A444 34764256
    5 7rf3:A (2.26) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 34764256
    6 7rf3:A (2.26) BS06 OEX 1.10.3.9 GO:0005506 ... P0A444 34764256
    7 7rf3:A (2.26) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 34764256
    8 7rf3:A (2.26) BS08 PHO 1.10.3.9 GO:0005506 ... P0A444 34764256
    9 7rf3:A (2.26) BS09 BCT 1.10.3.9 GO:0005506 ... P0A444 34764256
    10 7rf3:A (2.26) BS10 CLA 1.10.3.9 GO:0005506 ... P0A444 34764256
    11 7rf3:B (2.26) BS01 CLA ? GO:0009521 ... Q8DIQ1 34764256
    12 7rf3:B (2.26) BS02 CLA ? GO:0009521 ... Q8DIQ1 34764256
    13 7rf3:B (2.26) BS03 CLA ? GO:0009521 ... Q8DIQ1 34764256
    14 7rf3:B (2.26) BS04 CLA ? GO:0009521 ... Q8DIQ1 34764256
    15 7rf3:B (2.26) BS05 CLA ? GO:0009521 ... Q8DIQ1 34764256
    16 7rf3:B (2.26) BS06 CLA ? GO:0009521 ... Q8DIQ1 34764256
    17 7rf3:B (2.26) BS07 CLA ? GO:0009521 ... Q8DIQ1 34764256
    18 7rf3:B (2.26) BS08 CLA ? GO:0009521 ... Q8DIQ1 34764256
    19 7rf3:B (2.26) BS09 CLA ? GO:0009521 ... Q8DIQ1 34764256
    20 7rf3:B (2.26) BS10 CLA ? GO:0009521 ... Q8DIQ1 34764256
    21 7rf3:B (2.26) BS11 CLA ? GO:0009521 ... Q8DIQ1 34764256
    22 7rf3:B (2.26) BS12 CLA ? GO:0009521 ... Q8DIQ1 34764256
    23 7rf3:B (2.26) BS13 CLA ? GO:0009521 ... Q8DIQ1 34764256
    24 7rf3:B (2.26) BS14 CLA ? GO:0009521 ... Q8DIQ1 34764256
    25 7rf3:B (2.26) BS15 CLA ? GO:0009521 ... Q8DIQ1 34764256
    26 7rf3:B (2.26) BS16 CLA ? GO:0009521 ... Q8DIQ1 34764256
    27 7rf3:C (2.26) BS01 OEX ? GO:0005737 ... Q8DIF8 34764256
    28 7rf3:C (2.26) BS02 CLA ? GO:0005737 ... Q8DIF8 34764256
    29 7rf3:C (2.26) BS03 CLA ? GO:0005737 ... Q8DIF8 34764256
    30 7rf3:C (2.26) BS04 CLA ? GO:0005737 ... Q8DIF8 34764256
    31 7rf3:C (2.26) BS05 CLA ? GO:0005737 ... Q8DIF8 34764256
    32 7rf3:C (2.26) BS06 CLA ? GO:0005737 ... Q8DIF8 34764256
    33 7rf3:C (2.26) BS07 CLA ? GO:0005737 ... Q8DIF8 34764256
    34 7rf3:C (2.26) BS08 CLA ? GO:0005737 ... Q8DIF8 34764256
    35 7rf3:C (2.26) BS09 CLA ? GO:0005737 ... Q8DIF8 34764256
    36 7rf3:C (2.26) BS10 CLA ? GO:0005737 ... Q8DIF8 34764256
    37 7rf3:C (2.26) BS11 CLA ? GO:0005737 ... Q8DIF8 34764256
    38 7rf3:C (2.26) BS12 CLA ? GO:0005737 ... Q8DIF8 34764256
    39 7rf3:C (2.26) BS13 CLA ? GO:0005737 ... Q8DIF8 34764256
    40 7rf3:C (2.26) BS14 CLA ? GO:0005737 ... Q8DIF8 34764256
    41 7rf3:D (2.26) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    42 7rf3:D (2.26) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    43 7rf3:D (2.26) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    44 7rf3:D (2.26) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    45 7rf3:D (2.26) BS05 PHO 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    46 7rf3:D (2.26) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    47 7rf3:D (2.26) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    48 7rf3:D (2.26) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    49 7rf3:D (2.26) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    50 7rf3:E (2.26) BS01 peptide ? GO:0005506 ... Q8DIP0 34764256
    51 7rf3:E (2.26) BS02 HEM ? GO:0005506 ... Q8DIP0 34764256
    52 7rf3:F (2.26) BS01 HEM ? GO:0005506 ... Q8DIN9 34764256
    53 7rf3:H (2.26) BS01 CLA ? GO:0009523 ... Q8DJ43 34764256
    54 7rf3:H (2.26) BS02 CLA ? GO:0009523 ... Q8DJ43 34764256
    55 7rf3:H (2.26) BS03 CLA ? GO:0009523 ... Q8DJ43 34764256
    56 7rf3:I (2.26) BS01 CLA ? GO:0005737 ... Q8DJZ6 34764256
    57 7rf3:K (2.26) BS01 peptide ? GO:0005737 ... Q9F1K9 34764256
    58 7rf3:K (2.26) BS02 CLA ? GO:0005737 ... Q9F1K9 34764256
    59 7rf3:K (2.26) BS03 CLA ? GO:0005737 ... Q9F1K9 34764256
    60 7rf3:V (2.26) BS01 HEC ? GO:0005506 ... P0A386 34764256
    61 7rf3:X (2.26) BS01 CLA ? GO:0009523 ... Q9F1R6 34764256
    62 7rf3:Z (2.26) BS01 peptide ? GO:0009523 ... Q8DHJ2 34764256
    63 7rf3:a (2.26) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 34764256
    64 7rf3:a (2.26) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 34764256
    65 7rf3:a (2.26) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 34764256
    66 7rf3:a (2.26) BS04 PHO 1.10.3.9 GO:0005506 ... P0A444 34764256
    67 7rf3:a (2.26) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 34764256
    68 7rf3:a (2.26) BS06 BCT 1.10.3.9 GO:0005506 ... P0A444 34764256
    69 7rf3:a (2.26) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 34764256
    70 7rf3:a (2.26) BS08 OEX 1.10.3.9 GO:0005506 ... P0A444 34764256
    71 7rf3:a (2.26) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 34764256
    72 7rf3:b (2.26) BS01 CLA ? GO:0009521 ... Q8DIQ1 34764256
    73 7rf3:b (2.26) BS02 CLA ? GO:0009521 ... Q8DIQ1 34764256
    74 7rf3:b (2.26) BS03 CLA ? GO:0009521 ... Q8DIQ1 34764256
    75 7rf3:b (2.26) BS04 CLA ? GO:0009521 ... Q8DIQ1 34764256
    76 7rf3:b (2.26) BS05 CLA ? GO:0009521 ... Q8DIQ1 34764256
    77 7rf3:b (2.26) BS06 CLA ? GO:0009521 ... Q8DIQ1 34764256
    78 7rf3:b (2.26) BS07 CLA ? GO:0009521 ... Q8DIQ1 34764256
    79 7rf3:b (2.26) BS08 CLA ? GO:0009521 ... Q8DIQ1 34764256
    80 7rf3:b (2.26) BS09 CLA ? GO:0009521 ... Q8DIQ1 34764256
    81 7rf3:b (2.26) BS10 CLA ? GO:0009521 ... Q8DIQ1 34764256
    82 7rf3:b (2.26) BS11 CLA ? GO:0009521 ... Q8DIQ1 34764256
    83 7rf3:b (2.26) BS12 CLA ? GO:0009521 ... Q8DIQ1 34764256
    84 7rf3:b (2.26) BS13 CLA ? GO:0009521 ... Q8DIQ1 34764256
    85 7rf3:b (2.26) BS14 CLA ? GO:0009521 ... Q8DIQ1 34764256
    86 7rf3:b (2.26) BS15 CLA ? GO:0009521 ... Q8DIQ1 34764256
    87 7rf3:b (2.26) BS16 CLA ? GO:0009521 ... Q8DIQ1 34764256
    88 7rf3:c (2.26) BS01 OEX ? GO:0005737 ... Q8DIF8 34764256
    89 7rf3:c (2.26) BS02 CLA ? GO:0005737 ... Q8DIF8 34764256
    90 7rf3:c (2.26) BS03 CLA ? GO:0005737 ... Q8DIF8 34764256
    91 7rf3:c (2.26) BS04 CLA ? GO:0005737 ... Q8DIF8 34764256
    92 7rf3:c (2.26) BS05 CLA ? GO:0005737 ... Q8DIF8 34764256
    93 7rf3:c (2.26) BS06 CLA ? GO:0005737 ... Q8DIF8 34764256
    94 7rf3:c (2.26) BS07 CLA ? GO:0005737 ... Q8DIF8 34764256
    95 7rf3:c (2.26) BS08 CLA ? GO:0005737 ... Q8DIF8 34764256
    96 7rf3:c (2.26) BS09 CLA ? GO:0005737 ... Q8DIF8 34764256
    97 7rf3:c (2.26) BS10 CLA ? GO:0005737 ... Q8DIF8 34764256
    98 7rf3:c (2.26) BS11 CLA ? GO:0005737 ... Q8DIF8 34764256
    99 7rf3:c (2.26) BS12 CLA ? GO:0005737 ... Q8DIF8 34764256
    100 7rf3:c (2.26) BS13 CLA ? GO:0005737 ... Q8DIF8 34764256
    101 7rf3:c (2.26) BS14 CLA ? GO:0005737 ... Q8DIF8 34764256
    102 7rf3:d (2.26) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    103 7rf3:d (2.26) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    104 7rf3:d (2.26) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    105 7rf3:d (2.26) BS04 BCT 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    106 7rf3:d (2.26) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    107 7rf3:d (2.26) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    108 7rf3:d (2.26) BS07 PHO 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    109 7rf3:d (2.26) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    110 7rf3:d (2.26) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    111 7rf3:e (2.26) BS01 peptide ? GO:0005506 ... Q8DIP0 34764256
    112 7rf3:e (2.26) BS02 HEM ? GO:0005506 ... Q8DIP0 34764256
    113 7rf3:f (2.26) BS01 HEM ? GO:0005506 ... Q8DIN9 34764256
    114 7rf3:h (2.26) BS01 CLA ? GO:0009523 ... Q8DJ43 34764256
    115 7rf3:h (2.26) BS02 CLA ? GO:0009523 ... Q8DJ43 34764256
    116 7rf3:h (2.26) BS03 CLA ? GO:0009523 ... Q8DJ43 34764256
    117 7rf3:h (2.26) BS04 CLA ? GO:0009523 ... Q8DJ43 34764256
    118 7rf3:h (2.26) BS05 CLA ? GO:0009523 ... Q8DJ43 34764256
    119 7rf3:i (2.26) BS01 CLA ? GO:0005737 ... Q8DJZ6 34764256
    120 7rf3:k (2.26) BS01 CLA ? GO:0005737 ... Q9F1K9 34764256
    121 7rf3:k (2.26) BS02 CLA ? GO:0005737 ... Q9F1K9 34764256
    122 7rf3:v (2.26) BS01 HEC ? GO:0005506 ... P0A386 34764256
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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