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BioLiP
Download all results in tab-seperated text for 100 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qi5:0 (2.63) BS01 rna ? GO:0003723 ... Q9BYC8 38769321
    2 7qi5:0 (2.63) BS02 ZN ? GO:0003723 ... Q9BYC8 38769321
    3 7qi5:1 (2.63) BS01 rna ? GO:0003735 ... O75394 38769321
    4 7qi5:2 (2.63) BS01 rna ? GO:0003735 ... Q9BQ48 38769321
    5 7qi5:3 (2.63) BS01 rna ? GO:0003735 ... Q9NZE8 38769321
    6 7qi5:4 (2.63) BS01 rna ? GO:0003735 ... Q9P0J6 38769321
    7 7qi5:4 (2.63) BS02 ZN ? GO:0003735 ... Q9P0J6 38769321
    8 7qi5:5 (2.63) BS01 rna ? GO:0003723 ... Q9BZE1 38769321
    9 7qi5:6 (2.63) BS01 rna ? GO:0005515 ... Q96DV4 38769321
    10 7qi5:6 (2.63) BS02 rna ? GO:0005515 ... Q96DV4 38769321
    11 7qi5:8 (2.63) BS01 rna ? GO:0003723 ... Q9NQ50 38769321
    12 7qi5:8 (2.63) BS02 rna ? GO:0003723 ... Q9NQ50 38769321
    13 7qi5:8 (2.63) BS03 rna ? GO:0003723 ... Q9NQ50 38769321
    14 7qi5:8 (2.63) BS04 rna ? GO:0003723 ... Q9NQ50 38769321
    15 7qi5:9 (2.63) BS01 rna ? GO:0003723 ... Q8IXM3 38769321
    16 7qi5:A0 (2.63) BS01 rna ? GO:0003735 ... P82930 38769321
    17 7qi5:A1 (2.63) BS01 rna ? GO:0003723 ... P82673 38769321
    18 7qi5:A2 (2.63) BS01 rna ? GO:0001650 ... Q96BP2 38769321
    19 7qi5:A3 (2.63) BS01 rna ? GO:0005515 ... Q9NWT8 38769321
    20 7qi5:A3 (2.63) BS02 rna ? GO:0005515 ... Q9NWT8 38769321
    21 7qi5:A4 (2.63) BS01 rna ? GO:0003723 ... Q96EY7 38769321
    22 7qi5:AB (2.63) BS01 rna ? GO:0003735 ... Q9Y399 38769321
    23 7qi5:AB (2.63) BS02 MG ? GO:0003735 ... Q9Y399 38769321
    24 7qi5:AC (2.63) BS01 rna ? GO:0003723 ... Q96EL2 38769321
    25 7qi5:AD (2.63) BS01 rna ? GO:0003723 ... P82675 38769321
    26 7qi5:AD (2.63) BS02 rna ? GO:0003723 ... P82675 38769321
    27 7qi5:AE (2.63) BS01 rna ? GO:0003735 ... P82932 38769321
    28 7qi5:AF (2.63) BS01 rna ? GO:0000028 ... Q9Y2R9 38769321
    29 7qi5:AF (2.63) BS02 rna ? GO:0000028 ... Q9Y2R9 38769321
    30 7qi5:AF (2.63) BS03 rna ? GO:0000028 ... Q9Y2R9 38769321
    31 7qi5:AG (2.63) BS01 rna ? GO:0003723 ... P82933 38769321
    32 7qi5:AG (2.63) BS02 rna ? GO:0003723 ... P82933 38769321
    33 7qi5:AG (2.63) BS03 rna ? GO:0003723 ... P82933 38769321
    34 7qi5:AH (2.63) BS01 rna ? GO:0003674 ... P82664 38769321
    35 7qi5:AI (2.63) BS01 rna ? GO:0003723 ... P82912 38769321
    36 7qi5:AJ (2.63) BS01 rna ? GO:0003723 ... O15235 38769321
    37 7qi5:AK (2.63) BS01 rna ? GO:0003723 ... O60783 38769321
    38 7qi5:AL (2.63) BS01 rna ? GO:0003723 ... P82914 38769321
    39 7qi5:AL (2.63) BS02 NAD ? GO:0003723 ... P82914 38769321
    40 7qi5:AM (2.63) BS01 rna ? GO:0003735 ... Q9Y3D3 38769321
    41 7qi5:AM (2.63) BS02 FES ? GO:0003735 ... Q9Y3D3 38769321
    42 7qi5:AN (2.63) BS01 rna ? GO:0003735 ... Q9Y2R5 38769321
    43 7qi5:AO (2.63) BS01 rna ? GO:0003735 ... Q9Y676 38769321
    44 7qi5:AO (2.63) BS02 ZN ? GO:0003735 ... Q9Y676 38769321
    45 7qi5:AP (2.63) BS01 rna ? GO:0003735 ... Q9Y3D5 38769321
    46 7qi5:AP (2.63) BS02 FES ? GO:0003735 ... Q9Y3D5 38769321
    47 7qi5:AQ (2.63) BS01 rna ? GO:0003735 ... A0A2J8VEN6 38769321
    48 7qi5:AS (2.63) BS01 rna ? GO:0003723 ... Q9Y3D9 38769321
    49 7qi5:AT (2.63) BS01 rna ? GO:0003735 ... P82663 38769321
    50 7qi5:AT (2.63) BS02 FES ? GO:0003735 ... P82663 38769321
    51 7qi5:AU (2.63) BS01 rna ? GO:0003723 ... Q9BYN8 38769321
    52 7qi5:AV (2.63) BS01 rna ? GO:0000049 ... Q92552 38769321
    53 7qi5:AX (2.63) BS01 rna ? GO:0003723 ... P51398 38769321
    54 7qi5:AX (2.63) BS02 ATP ? GO:0003723 ... P51398 38769321
    55 7qi5:AX (2.63) BS03 GDP ? GO:0003723 ... P51398 38769321
    56 7qi5:AZ (2.63) BS01 rna ? GO:0003735 ... Q9Y291 38769321
    57 7qi5:D (2.63) BS01 rna ? GO:0003723 ... Q5T653 38769321
    58 7qi5:E (2.63) BS01 rna ? GO:0003723 ... P09001 38769321
    59 7qi5:F (2.63) BS01 rna ? GO:0003723 ... Q9BYD3 38769321
    60 7qi5:H (2.63) BS01 rna ? GO:0003723 ... Q9BYD2 38769321
    61 7qi5:I (2.63) BS01 rna ? GO:0003723 ... Q7Z7H8 38769321
    62 7qi5:J (2.63) BS01 rna ? GO:0003723 ... Q9Y3B7 38769321
    63 7qi5:K (2.63) BS01 rna ? GO:0003723 ... Q9BYD1 38769321
    64 7qi5:L (2.63) BS01 rna ? GO:0003723 ... Q6P1L8 38769321
    65 7qi5:M (2.63) BS01 rna ? GO:0003723 ... Q9P015 38769321
    66 7qi5:N (2.63) BS01 rna ? GO:0003735 ... Q9NX20 38769321
    67 7qi5:O (2.63) BS01 rna ? GO:0003735 ... Q9NRX2 38769321
    68 7qi5:P (2.63) BS01 rna ? GO:0003723 ... Q9H0U6 38769321
    69 7qi5:P (2.63) BS02 rna ? GO:0003723 ... Q9H0U6 38769321
    70 7qi5:Q (2.63) BS01 rna ? GO:0003735 ... P49406 38769321
    71 7qi5:R (2.63) BS01 rna ? GO:0003723 ... Q9BYC9 38769321
    72 7qi5:S (2.63) BS01 rna ? GO:0003723 ... Q7Z2W9 38769321
    73 7qi5:T (2.63) BS01 rna ? GO:0003723 ... Q9NWU5 38769321
    74 7qi5:U (2.63) BS01 rna ? GO:0001650 ... Q16540 38769321
    75 7qi5:V (2.63) BS01 rna ? GO:0003723 ... Q96A35 38769321
    76 7qi5:W (2.63) BS01 rna ? GO:0003723 ... Q9P0M9 38769321
    77 7qi5:W (2.63) BS02 rna ? GO:0003723 ... Q9P0M9 38769321
    78 7qi5:X (2.63) BS01 rna ? GO:0003723 ... Q13084 38769321
    79 7qi5:Y (2.63) BS01 rna ? GO:0003674 ... Q9HD33 38769321
    80 7qi5:Z (2.63) BS01 rna ? GO:0003735 ... Q8TCC3 38769321
    81 7qi5:a (2.63) BS01 rna ? GO:0003723 ... Q9Y6G3 38769321
    82 7qi5:b (2.63) BS01 rna ? GO:0003723 ... Q8N983 38769321
    83 7qi5:c (2.63) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 38769321
    84 7qi5:d (2.63) BS01 rna ? GO:0003723 ... Q9BRJ2 38769321
    85 7qi5:e (2.63) BS01 rna ? GO:0003674 ... Q9H2W6 38769321
    86 7qi5:e (2.63) BS02 VAL ? GO:0003674 ... Q9H2W6 38769321
    87 7qi5:f (2.63) BS01 rna ? GO:0005515 ... Q96GC5 38769321
    88 7qi5:f (2.63) BS02 rna ? GO:0005515 ... Q96GC5 38769321
    89 7qi5:g (2.63) BS01 rna ? GO:0003735 ... Q13405 38769321
    90 7qi5:i (2.63) BS01 rna ? GO:0003735 ... Q4U2R6 38769321
    91 7qi5:j (2.63) BS01 rna ? GO:0003735 ... Q86TS9 38769321
    92 7qi5:k (2.63) BS01 rna ? GO:0005515 ... Q96EL3 38769321
    93 7qi5:l (2.63) BS01 rna ? GO:0003723 ... Q6P161 38769321
    94 7qi5:o (2.63) BS01 rna ? GO:0003735 ... Q9BQC6 38769321
    95 7qi5:q (2.63) BS01 rna ? GO:0005515 ... Q8TAE8 38769321
    96 7qi5:r (2.63) BS01 rna ? GO:0003735 ... Q9NVS2 38769321
    97 7qi5:r (2.63) BS02 FES ? GO:0003735 ... Q9NVS2 38769321
    98 7qi5:s (2.63) BS01 rna ? GO:0003723 ... Q9NP92 38769321
    99 7qi5:z (2.63) BS01 rna ? GO:0003723 ... Q9BYD6 38769321
    100 7qi5:z (2.63) BS02 rna ? GO:0003723 ... Q9BYD6 38769321
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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