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BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qgh:1 (4.48) BS01 rna N/A GO:0003735 ... N/A 35264790
    2 7qgh:2 (4.48) BS01 rna N/A GO:0003676 ... N/A 35264790
    3 7qgh:2 (4.48) BS02 rna N/A GO:0003676 ... N/A 35264790
    4 7qgh:3 (4.48) BS01 rna ? GO:0000028 ... P0A7V8 35264790
    5 7qgh:4 (4.48) BS01 rna ? GO:0000028 ... P0A7W1 35264790
    6 7qgh:5 (4.48) BS01 rna ? GO:0002181 ... P02358 35264790
    7 7qgh:6 (4.48) BS01 rna ? GO:0003723 ... P02359 35264790
    8 7qgh:7 (4.48) BS01 rna ? GO:0000028 ... P0A7W7 35264790
    9 7qgh:8 (4.48) BS01 rna ? GO:0000049 ... P0A7X3 35264790
    10 7qgh:8 (4.48) BS02 rna ? GO:0000049 ... P0A7X3 35264790
    11 7qgh:9 (4.48) BS01 rna N/A GO:0003723 ... N/A 35264790
    12 7qgh:A (4.48) BS01 rna ? GO:0002181 ... P0A7R9 35264790
    13 7qgh:B (4.48) BS01 rna ? GO:0000049 ... P0A7S3 35264790
    14 7qgh:C (4.48) BS01 rna ? GO:0000027 ... P0A7L0 35264790
    15 7qgh:D (4.48) BS01 rna ? GO:0000049 ... P0A7S9 35264790
    16 7qgh:E (4.48) BS01 rna ? GO:0000028 ... P0AG59 35264790
    17 7qgh:F (4.48) BS01 rna ? GO:0000028 ... P0ADZ4 35264790
    18 7qgh:F (4.48) BS02 rna ? GO:0000028 ... P0ADZ4 35264790
    19 7qgh:G (4.48) BS01 rna N/A GO:0003735 ... N/A 35264790
    20 7qgh:H (4.48) BS01 rna ? GO:0000028 ... P0AG63 35264790
    21 7qgh:I (4.48) BS01 rna ? GO:0002181 ... P0A7T7 35264790
    22 7qgh:J (4.48) BS01 rna N/A GO:0003723 ... N/A 35264790
    23 7qgh:K (4.48) BS01 rna ? GO:0000028 ... P0A7U7 35264790
    24 7qgh:L (4.48) BS01 rna ? GO:0002181 ... P0A7M9 35264790
    25 7qgh:P (4.48) BS01 rna N/A GO:0003723 ... N/A 35264790
    26 7qgh:Q (4.48) BS01 rna ? GO:0000027 ... P60438 35264790
    27 7qgh:R (4.48) BS01 rna ? GO:0001070 ... P60723 35264790
    28 7qgh:S (4.48) BS01 rna ? GO:0000027 ... P62399 35264790
    29 7qgh:S (4.48) BS02 rna ? GO:0000027 ... P62399 35264790
    30 7qgh:S (4.48) BS03 rna ? GO:0000027 ... P62399 35264790
    31 7qgh:T (4.48) BS01 rna ? GO:0000027 ... P0AG55 35264790
    32 7qgh:U (4.48) BS01 rna ? GO:0002181 ... P0A7R1 35264790
    33 7qgh:V (4.48) BS01 rna ? GO:0000027 ... P0A7J7 35264790
    34 7qgh:W (4.48) BS01 rna ? GO:0002181 ... P0AA10 35264790
    35 7qgh:X (4.48) BS01 rna ? GO:0002181 ... P0ADY3 35264790
    36 7qgh:X (4.48) BS02 rna ? GO:0002181 ... P0ADY3 35264790
    37 7qgh:Y (4.48) BS01 rna ? GO:0002181 ... P02413 35264790
    38 7qgh:Z (4.48) BS01 rna N/A GO:0003735 ... N/A 35264790
    39 7qgh:Z (4.48) BS02 rna N/A GO:0003735 ... N/A 35264790
    40 7qgh:a (4.48) BS01 rna ? GO:0000027 ... P0AG44 35264790
    41 7qgh:b (4.48) BS01 rna ? GO:0002181 ... P0C018 35264790
    42 7qgh:b (4.48) BS02 rna ? GO:0002181 ... P0C018 35264790
    43 7qgh:c (4.48) BS01 rna ? GO:0000027 ... P0A7K6 35264790
    44 7qgh:c (4.48) BS02 rna ? GO:0000027 ... P0A7K6 35264790
    45 7qgh:d (4.48) BS01 rna ? GO:0000027 ... P0A7L3 35264790
    46 7qgh:e (4.48) BS01 rna ? GO:0002181 ... P0AG48 35264790
    47 7qgh:f (4.48) BS01 rna ? GO:0002181 ... P61175 35264790
    48 7qgh:g (4.48) BS01 rna ? GO:0000027 ... P0ADZ0 35264790
    49 7qgh:h (4.48) BS01 rna ? GO:0000027 ... P60624 35264790
    50 7qgh:i (4.48) BS01 rna ? GO:0000027 ... P68919 35264790
    51 7qgh:j (4.48) BS01 rna ? GO:0000027 ... P0A7L8 35264790
    52 7qgh:j (4.48) BS02 rna ? GO:0000027 ... P0A7L8 35264790
    53 7qgh:k (4.48) BS01 rna ? GO:0000027 ... P0A7M2 35264790
    54 7qgh:l (4.48) BS01 rna ? GO:0000027 ... P0A7M6 35264790
    55 7qgh:m (4.48) BS01 rna ? GO:0000027 ... P0AG51 35264790
    56 7qgh:m (4.48) BS02 rna ? GO:0000027 ... P0AG51 35264790
    57 7qgh:n (4.48) BS01 rna ? GO:0000027 ... P0A7N4 35264790
    58 7qgh:o (4.48) BS01 rna ? GO:0000027 ... P0A7N9 35264790
    59 7qgh:p (4.48) BS01 rna N/A GO:0003735 ... N/A 35264790
    60 7qgh:q (4.48) BS01 rna N/A GO:0003735 ... N/A 35264790
    61 7qgh:r (4.48) BS01 rna N/A GO:0003735 ... N/A 35264790
    62 7qgh:s (4.48) BS01 rna N/A GO:0003735 ... N/A 35264790
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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