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BioLiP
Download all results in tab-seperated text for 86 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qca:LA0 (2.79) BS01 rna N/A GO:0003735 ... N/A N/A
    2 7qca:LA0 (2.79) BS02 rna N/A GO:0003735 ... N/A N/A
    3 7qca:LAA (2.79) BS01 rna N/A GO:0003735 ... N/A N/A
    4 7qca:LB0 (2.79) BS01 rna ? GO:0003723 ... S7XFB1 N/A
    5 7qca:LC0 (2.79) BS01 rna ? GO:0003723 ... S7WCM8 N/A
    6 7qca:LCC (2.79) BS01 rna ? GO:0003723 ... S7WAY0 N/A
    7 7qca:LD0 (2.79) BS01 rna ? GO:0000027 ... S7XIG7 N/A
    8 7qca:LD0 (2.79) BS02 rna ? GO:0000027 ... S7XIG7 N/A
    9 7qca:LDD (2.79) BS01 rna ? GO:0002181 ... S7XW48 N/A
    10 7qca:LE0 (2.79) BS01 rna ? GO:0000027 ... S7W5S3 N/A
    11 7qca:LEE (2.79) BS01 rna ? GO:0003735 ... S7XKE0 N/A
    12 7qca:LF0 (2.79) BS01 rna ? GO:0000463 ... S7W946 N/A
    13 7qca:LF0 (2.79) BS02 rna ? GO:0000463 ... S7W946 N/A
    14 7qca:LFF (2.79) BS01 rna ? GO:0002181 ... S7W662 N/A
    15 7qca:LG0 (2.79) BS01 rna ? GO:0000470 ... S7XU63 N/A
    16 7qca:LGG (2.79) BS01 rna ? GO:0003735 ... S7W7C6 N/A
    17 7qca:LGG (2.79) BS02 ZN ? GO:0003735 ... S7W7C6 N/A
    18 7qca:LH0 (2.79) BS01 rna ? GO:0002181 ... S7XRZ9 N/A
    19 7qca:LHH (2.79) BS01 rna N/A GO:0003735 ... N/A N/A
    20 7qca:LI0 (2.79) BS01 rna ? GO:0000027 ... S7WBF8 N/A
    21 7qca:LI0 (2.79) BS02 rna ? GO:0000027 ... S7WBF8 N/A
    22 7qca:LII (2.79) BS01 rna ? GO:0002181 ... S7WED1 N/A
    23 7qca:LJ0 (2.79) BS01 rna ? GO:0003723 ... S7WB69 N/A
    24 7qca:LJ0 (2.79) BS02 rna ? GO:0003723 ... S7WB69 N/A
    25 7qca:LJJ (2.79) BS01 rna N/A GO:0003735 ... N/A N/A
    26 7qca:LJJ (2.79) BS02 ZN N/A GO:0003735 ... N/A N/A
    27 7qca:LL0 (2.79) BS01 rna ? GO:0003723 ... S7XVM9 N/A
    28 7qca:LLL (2.79) BS01 rna ? GO:0003735 ... S7XTP1 N/A
    29 7qca:LM0 (2.79) BS01 rna ? N/A S7XVN9 N/A
    30 7qca:LMM (2.79) BS01 rna ? GO:0003735 ... S7XSQ3 N/A
    31 7qca:LMM (2.79) BS02 ZN ? GO:0003735 ... S7XSQ3 N/A
    32 7qca:LN0 (2.79) BS01 rna ? GO:0002181 ... S7W7A2 N/A
    33 7qca:LO0 (2.79) BS01 rna ? GO:0003729 ... S7XUD8 N/A
    34 7qca:LOO (2.79) BS01 rna ? GO:0003735 ... S7XL20 N/A
    35 7qca:LOO (2.79) BS02 ZN ? GO:0003735 ... S7XL20 N/A
    36 7qca:LP0 (2.79) BS01 rna ? GO:0002181 ... S7WDR4 N/A
    37 7qca:LPP (2.79) BS01 rna N/A GO:0003735 ... N/A N/A
    38 7qca:LPP (2.79) BS02 ZN N/A GO:0003735 ... N/A N/A
    39 7qca:LQ0 (2.79) BS01 rna ? GO:0003723 ... S7WAI2 N/A
    40 7qca:LR0 (2.79) BS01 rna ? GO:0003723 ... S7WBY9 N/A
    41 7qca:LS0 (2.79) BS01 rna ? GO:0003735 ... S7WAG4 N/A
    42 7qca:LS0 (2.79) BS02 rna ? GO:0003735 ... S7WAG4 N/A
    43 7qca:LT0 (2.79) BS01 rna ? GO:0003735 ... S7W8F6 N/A
    44 7qca:LT0 (2.79) BS02 rna ? GO:0003735 ... S7W8F6 N/A
    45 7qca:LU0 (2.79) BS01 rna ? GO:0002181 ... S7W958 N/A
    46 7qca:LV0 (2.79) BS01 rna ? GO:0003735 ... S7XLC4 N/A
    47 7qca:LW0 (2.79) BS01 rna ? GO:0005840 ... S7XSY2 N/A
    48 7qca:LW0 (2.79) BS02 rna ? GO:0005840 ... S7XSY2 N/A
    49 7qca:LX0 (2.79) BS01 rna ? GO:0000027 ... S7XFW8 N/A
    50 7qca:LY0 (2.79) BS01 rna ? GO:0002181 ... S7W884 N/A
    51 7qca:LZ0 (2.79) BS01 rna ? GO:0003735 ... S7XU08 N/A
    52 7qca:SA0 (2.79) BS01 rna ? GO:0000028 ... S7W8R1 N/A
    53 7qca:SAA (2.79) BS01 rna ? GO:0003729 ... S7W9M7 N/A
    54 7qca:SAA (2.79) BS02 ZN ? GO:0003729 ... S7W9M7 N/A
    55 7qca:SB0 (2.79) BS01 rna N/A GO:0003735 ... N/A N/A
    56 7qca:SBB (2.79) BS01 rna N/A GO:0003735 ... N/A N/A
    57 7qca:SBB (2.79) BS02 ZN N/A GO:0003735 ... N/A N/A
    58 7qca:SC0 (2.79) BS01 rna ? GO:0003723 ... S7W7R5 N/A
    59 7qca:SD0 (2.79) BS01 rna ? GO:0003723 ... S7WAW0 N/A
    60 7qca:SDD (2.79) BS01 rna ? GO:0003735 ... S7XJB1 N/A
    61 7qca:SDD (2.79) BS02 ZN ? GO:0003735 ... S7XJB1 N/A
    62 7qca:SE0 (2.79) BS01 rna ? GO:0003723 ... S7XG51 N/A
    63 7qca:SEE (2.79) BS01 rna N/A GO:0003735 ... N/A N/A
    64 7qca:SF0 (2.79) BS01 rna ? GO:0000028 ... S7W4M9 N/A
    65 7qca:SFF (2.79) BS01 rna ? GO:0003735 ... S7W9X5 N/A
    66 7qca:SFF (2.79) BS02 ZN ? GO:0003735 ... S7W9X5 N/A
    67 7qca:SG0 (2.79) BS01 rna N/A GO:0003735 ... N/A N/A
    68 7qca:SGG (2.79) BS01 rna ? GO:0001934 ... S7XVG3 N/A
    69 7qca:SH0 (2.79) BS01 rna ? GO:0003735 ... S7XV29 N/A
    70 7qca:SI0 (2.79) BS01 rna ? GO:0000462 ... S7XGW2 N/A
    71 7qca:SJ0 (2.79) BS01 rna ? GO:0003723 ... S7W8E3 N/A
    72 7qca:SK0 (2.79) BS01 rna ? GO:0003723 ... S7XU48 N/A
    73 7qca:SL0 (2.79) BS01 rna ? GO:0003735 ... S7W8R0 N/A
    74 7qca:SM0 (2.79) BS01 rna ? GO:0003735 ... S7W7D2 N/A
    75 7qca:SN0 (2.79) BS01 rna ? GO:0003735 ... S7XVZ9 N/A
    76 7qca:SO0 (2.79) BS01 rna ? GO:0000028 ... S7W6I0 N/A
    77 7qca:SP0 (2.79) BS01 rna ? GO:0000028 ... S7XKY9 N/A
    78 7qca:SQ0 (2.79) BS01 rna ? GO:0000462 ... S7WDU9 N/A
    79 7qca:SR0 (2.79) BS01 rna N/A GO:0003735 ... N/A N/A
    80 7qca:SS0 (2.79) BS01 rna ? GO:0003676 ... S7XJA1 N/A
    81 7qca:ST0 (2.79) BS01 rna ? GO:0000028 ... S7W7P5 N/A
    82 7qca:SU0 (2.79) BS01 rna ? GO:0005840 ... S7W986 N/A
    83 7qca:SW0 (2.79) BS01 rna ? GO:0003735 ... S7XK92 N/A
    84 7qca:SX0 (2.79) BS01 rna N/A GO:0003735 ... N/A N/A
    85 7qca:SY0 (2.79) BS01 rna ? GO:0003735 ... S7W8J5 N/A
    86 7qca:SZ0 (2.79) BS01 rna ? GO:0003735 ... S7WAV8 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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