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BioLiP
Download all results in tab-seperated text for 108 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pzy:0 (2.32) BS01 rna ? GO:0003735 ... A0A1D8PLC9 35613268
    2 7pzy:0 (2.32) BS02 rna ? GO:0003735 ... A0A1D8PLC9 35613268
    3 7pzy:2 (2.32) BS01 rna ? GO:0003735 ... A0A1D8PGY0 35613268
    4 7pzy:2 (2.32) BS02 rna ? GO:0003735 ... A0A1D8PGY0 35613268
    5 7pzy:5 (2.32) BS01 rna ? GO:0002181 ... A0A1D8PM41 35613268
    6 7pzy:6 (2.32) BS01 rna ? GO:0003735 ... A0A1D8PPT5 35613268
    7 7pzy:7 (2.32) BS01 rna ? GO:0002181 ... Q5A6A1 35613268
    8 7pzy:8 (2.32) BS01 rna ? GO:0000027 ... A0A1D8PPS1 35613268
    9 7pzy:8 (2.32) BS02 rna ? GO:0000027 ... A0A1D8PPS1 35613268
    10 7pzy:9 (2.32) BS01 rna ? GO:0002181 ... A0A1D8PCQ5 35613268
    11 7pzy:9 (2.32) BS02 rna ? GO:0002181 ... A0A1D8PCQ5 35613268
    12 7pzy:AA (2.32) BS01 rna ? GO:0003735 ... A0A1D8PFG4 35613268
    13 7pzy:AB (2.32) BS01 rna ? GO:0003723 ... A0A1D8PSC5 35613268
    14 7pzy:AC (2.32) BS01 rna ? GO:0002181 ... A0A1D8PF57 35613268
    15 7pzy:AD (2.32) BS01 rna ? GO:0003723 ... A0A1D8PM75 35613268
    16 7pzy:AE (2.32) BS01 rna ? GO:0002181 ... A0A1D8PHF5 35613268
    17 7pzy:AF (2.32) BS01 rna ? GO:0003735 ... A0A1D8PPN6 35613268
    18 7pzy:AG (2.32) BS01 rna ? GO:0002181 ... A0A1D8PHH4 35613268
    19 7pzy:AH (2.32) BS01 rna ? GO:0003735 ... A0A1D8PDZ1 35613268
    20 7pzy:AH (2.32) BS02 MG ? GO:0003735 ... A0A1D8PDZ1 35613268
    21 7pzy:AI (2.32) BS01 rna ? GO:0000463 ... A0A1D8PK30 35613268
    22 7pzy:AI (2.32) BS02 rna ? GO:0000463 ... A0A1D8PK30 35613268
    23 7pzy:AJ (2.32) BS01 rna ? GO:0002181 ... A0A1D8PH21 35613268
    24 7pzy:AK (2.32) BS01 rna ? GO:0003723 ... A0A1D8PF45 35613268
    25 7pzy:AK (2.32) BS02 rna ? GO:0003723 ... A0A1D8PF45 35613268
    26 7pzy:AK (2.32) BS03 ZN ? GO:0003723 ... A0A1D8PF45 35613268
    27 7pzy:AL (2.32) BS01 rna ? GO:0003735 ... A0A1D8PG16 35613268
    28 7pzy:AM (2.32) BS01 rna ? GO:0003735 ... A0A1D8PDT4 35613268
    29 7pzy:AM (2.32) BS02 rna ? GO:0003735 ... A0A1D8PDT4 35613268
    30 7pzy:AN (2.32) BS01 rna ? GO:0003735 ... A0A1D8PL68 35613268
    31 7pzy:AN (2.32) BS02 ZN ? GO:0003735 ... A0A1D8PL68 35613268
    32 7pzy:AP (2.32) BS01 rna ? GO:0003735 ... A0A1D8PEV4 35613268
    33 7pzy:AP (2.32) BS02 rna ? GO:0003735 ... A0A1D8PEV4 35613268
    34 7pzy:AP (2.32) BS03 ZN ? GO:0003735 ... A0A1D8PEV4 35613268
    35 7pzy:AP (2.32) BS04 MG ? GO:0003735 ... A0A1D8PEV4 35613268
    36 7pzy:AQ (2.32) BS01 rna ? GO:0003735 ... A0A1D8PP14 35613268
    37 7pzy:AQ (2.32) BS02 ZN ? GO:0003735 ... A0A1D8PP14 35613268
    38 7pzy:B (2.32) BS01 rna ? GO:0000028 ... O42817 35613268
    39 7pzy:C (2.32) BS01 rna ? GO:0003735 ... P40910 35613268
    40 7pzy:C (2.32) BS02 rna ? GO:0003735 ... P40910 35613268
    41 7pzy:D (2.32) BS01 rna ? GO:0000054 ... Q5A900 35613268
    42 7pzy:E (2.32) BS01 rna ? GO:0000054 ... A0A1D8PSV5 35613268
    43 7pzy:F (2.32) BS01 rna ? GO:0003723 ... A0A1D8PCI6 35613268
    44 7pzy:G (2.32) BS01 rna ? GO:0000028 ... Q5AG43 35613268
    45 7pzy:H (2.32) BS01 rna ? GO:0003735 ... A0A1D8PL99 35613268
    46 7pzy:I (2.32) BS01 rna ? GO:0003735 ... Q5AJ93 35613268
    47 7pzy:J (2.32) BS01 rna ? GO:0000462 ... Q59T44 35613268
    48 7pzy:J (2.32) BS02 rna ? GO:0000462 ... Q59T44 35613268
    49 7pzy:K (2.32) BS01 rna ? GO:0003723 ... A0A1D8PGY8 35613268
    50 7pzy:L (2.32) BS01 rna ? GO:0003674 ... A0A1D8PI15 35613268
    51 7pzy:M (2.32) BS01 rna ? GO:0003735 ... A0A1D8PN83 35613268
    52 7pzy:N (2.32) BS01 rna ? GO:0000028 ... Q5ADQ6 35613268
    53 7pzy:O (2.32) BS01 rna ? GO:0003735 ... A0A1D8PPE0 35613268
    54 7pzy:O (2.32) BS02 rna ? GO:0003735 ... A0A1D8PPE0 35613268
    55 7pzy:P (2.32) BS01 rna ? GO:0000028 ... A0A1D8PDT3 35613268
    56 7pzy:Q (2.32) BS01 rna ? GO:0000028 ... A0A1D8PK22 35613268
    57 7pzy:Q (2.32) BS02 rna ? GO:0000028 ... A0A1D8PK22 35613268
    58 7pzy:R (2.32) BS01 rna ? GO:0000462 ... A0A1D8PCW6 35613268
    59 7pzy:S (2.32) BS01 rna ? GO:0003735 ... A0A1D8PEY9 35613268
    60 7pzy:T (2.32) BS01 rna ? GO:0003676 ... A0A1D8PQQ5 35613268
    61 7pzy:U (2.32) BS01 rna ? GO:0000028 ... A0A1D8PK61 35613268
    62 7pzy:V (2.32) BS01 rna ? GO:0003723 ... Q5A389 35613268
    63 7pzy:W (2.32) BS01 rna ? GO:0000447 ... A0A1D8PCG7 35613268
    64 7pzy:X (2.32) BS01 rna ? GO:0003735 ... Q96W54 35613268
    65 7pzy:Y (2.32) BS01 rna ? GO:0003735 ... A0A1D8PDU3 35613268
    66 7pzy:Z (2.32) BS01 rna ? GO:0003735 ... Q5A7K0 35613268
    67 7pzy:a (2.32) BS01 rna ? GO:0003735 ... A0A1D8PNQ6 35613268
    68 7pzy:b (2.32) BS01 rna ? GO:0003729 ... Q5ALV6 35613268
    69 7pzy:c (2.32) BS01 rna ? GO:0000028 ... A0A1D8PTI7 35613268
    70 7pzy:d (2.32) BS01 rna ? GO:0000028 ... A0A1D8PQN0 35613268
    71 7pzy:e (2.32) BS01 rna ? GO:0002181 ... A0A1D8PTR4 35613268
    72 7pzy:e (2.32) BS02 ZN ? GO:0002181 ... A0A1D8PTR4 35613268
    73 7pzy:f (2.32) BS01 rna ? GO:0003735 ... A0A1D8PSK2 35613268
    74 7pzy:g (2.32) BS01 rna ? GO:0003735 ... Q5A109 35613268
    75 7pzy:g (2.32) BS02 ZN ? GO:0003735 ... Q5A109 35613268
    76 7pzy:h (2.32) BS01 rna ? GO:0001403 ... P83774 35613268
    77 7pzy:i (2.32) BS01 rna ? GO:0000723 ... A0A1D8PK71 35613268
    78 7pzy:i (2.32) BS02 rna ? GO:0000723 ... A0A1D8PK71 35613268
    79 7pzy:j (2.32) BS01 rna ? GO:0002181 ... A0A1D8PF08 35613268
    80 7pzy:j (2.32) BS02 rna ? GO:0002181 ... A0A1D8PF08 35613268
    81 7pzy:j (2.32) BS03 MG ? GO:0002181 ... A0A1D8PF08 35613268
    82 7pzy:k (2.32) BS01 rna ? GO:0000027 ... Q59LS1 35613268
    83 7pzy:l (2.32) BS01 rna ? GO:0003723 ... A0A1D8PFV1 35613268
    84 7pzy:l (2.32) BS02 rna ? GO:0003723 ... A0A1D8PFV1 35613268
    85 7pzy:m (2.32) BS01 rna ? GO:0000027 ... Q5AGZ7 35613268
    86 7pzy:m (2.32) BS02 rna ? GO:0000027 ... Q5AGZ7 35613268
    87 7pzy:n (2.32) BS01 rna ? GO:0000027 ... A0A1D8PCX8 35613268
    88 7pzy:o (2.32) BS01 rna ? GO:0000463 ... A0A1D8PDL6 35613268
    89 7pzy:o (2.32) BS02 rna ? GO:0000463 ... A0A1D8PDL6 35613268
    90 7pzy:p (2.32) BS01 rna ? GO:0000470 ... Q5ANA1 35613268
    91 7pzy:p (2.32) BS02 rna ? GO:0000470 ... Q5ANA1 35613268
    92 7pzy:q (2.32) BS01 rna ? GO:0002181 ... Q5AEN2 35613268
    93 7pzy:r (2.32) BS01 rna ? GO:0000027 ... Q5AIB8 35613268
    94 7pzy:r (2.32) BS02 rna ? GO:0000027 ... Q5AIB8 35613268
    95 7pzy:s (2.32) BS01 rna ? GO:0003723 ... A0A1D8PHW1 35613268
    96 7pzy:s (2.32) BS02 rna ? GO:0003723 ... A0A1D8PHW1 35613268
    97 7pzy:t (2.32) BS01 rna ? GO:0003723 ... O59931 35613268
    98 7pzy:t (2.32) BS02 rna ? GO:0003723 ... O59931 35613268
    99 7pzy:u (2.32) BS01 rna ? GO:0003723 ... A0A1D8PFL9 35613268
    100 7pzy:v (2.32) BS01 rna ? GO:0002181 ... Q5A6R1 35613268
    101 7pzy:v (2.32) BS02 rna ? GO:0002181 ... Q5A6R1 35613268
    102 7pzy:w (2.32) BS01 rna ? GO:0003729 ... Q5AB87 35613268
    103 7pzy:x (2.32) BS01 rna ? GO:0002181 ... Q59TE0 35613268
    104 7pzy:x (2.32) BS02 rna ? GO:0002181 ... Q59TE0 35613268
    105 7pzy:x (2.32) BS03 MG ? GO:0002181 ... Q59TE0 35613268
    106 7pzy:y (2.32) BS01 rna ? GO:0003723 ... A0A1D8PK43 35613268
    107 7pzy:z (2.32) BS01 rna ? GO:0003723 ... A0A1D8PK40 35613268
    108 7pzy:z (2.32) BS02 rna ? GO:0003723 ... A0A1D8PK40 35613268
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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