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BioLiP
Download all results in tab-seperated text for 90 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pwo:A1 (2.75) BS01 rna ? GO:0000028 ... A8BE86 35100413
    2 7pwo:A2 (2.75) BS01 rna ? GO:0002181 ... E2RTN4 35100413
    3 7pwo:A2 (2.75) BS02 rna ? GO:0002181 ... E2RTN4 35100413
    4 7pwo:B1 (2.75) BS01 rna ? GO:0003735 ... A8BS79 35100413
    5 7pwo:B1 (2.75) BS02 rna ? GO:0003735 ... A8BS79 35100413
    6 7pwo:B2 (2.75) BS01 rna ? GO:0003723 ... A8BRZ3 35100413
    7 7pwo:C1 (2.75) BS01 rna ? GO:0003723 ... A8BMZ1 35100413
    8 7pwo:C2 (2.75) BS01 rna ? GO:0003723 ... A8B7H8 35100413
    9 7pwo:C2 (2.75) BS02 rna ? GO:0003723 ... A8B7H8 35100413
    10 7pwo:C2 (2.75) BS03 MG ? GO:0003723 ... A8B7H8 35100413
    11 7pwo:D1 (2.75) BS01 rna ? GO:0003723 ... A8B8Z2 35100413
    12 7pwo:D2 (2.75) BS01 rna ? GO:0000027 ... E2RU47 35100413
    13 7pwo:D2 (2.75) BS02 rna ? GO:0000027 ... E2RU47 35100413
    14 7pwo:E1 (2.75) BS01 rna ? GO:0003723 ... A8BFE3 35100413
    15 7pwo:E1 (2.75) BS02 MG ? GO:0003723 ... A8BFE3 35100413
    16 7pwo:F1 (2.75) BS01 rna ? GO:0000028 ... A8BZD3 35100413
    17 7pwo:F2 (2.75) BS01 rna ? GO:0000463 ... A8BRY6 35100413
    18 7pwo:F2 (2.75) BS02 rna ? GO:0000463 ... A8BRY6 35100413
    19 7pwo:F2 (2.75) BS03 MG ? GO:0000463 ... A8BRY6 35100413
    20 7pwo:G1 (2.75) BS01 rna ? GO:0003735 ... A8B6L8 35100413
    21 7pwo:G2 (2.75) BS01 rna ? GO:0000470 ... A8BLL7 35100413
    22 7pwo:G2 (2.75) BS02 rna ? GO:0000470 ... A8BLL7 35100413
    23 7pwo:H1 (2.75) BS01 rna ? GO:0003735 ... A8BT38 35100413
    24 7pwo:H2 (2.75) BS01 rna ? GO:0002181 ... A8BNT5 35100413
    25 7pwo:I1 (2.75) BS01 rna ? GO:0000462 ... A8B252 35100413
    26 7pwo:I2 (2.75) BS01 rna ? GO:0000027 ... A8BM86 35100413
    27 7pwo:I2 (2.75) BS02 rna ? GO:0000027 ... A8BM86 35100413
    28 7pwo:J1 (2.75) BS01 rna ? GO:0003723 ... A8BKS8 35100413
    29 7pwo:J2 (2.75) BS01 rna ? GO:0003723 ... A8BI95 35100413
    30 7pwo:J2 (2.75) BS02 rna ? GO:0003723 ... A8BI95 35100413
    31 7pwo:L1 (2.75) BS01 rna ? GO:0003735 ... V6TVJ7 35100413
    32 7pwo:L2 (2.75) BS01 rna ? GO:0003735 ... A8B6M8 35100413
    33 7pwo:M2 (2.75) BS01 rna ? GO:0003723 ... A8B4F8 35100413
    34 7pwo:N1 (2.75) BS01 rna ? GO:0003735 ... A8BE02 35100413
    35 7pwo:N1 (2.75) BS02 rna ? GO:0003735 ... A8BE02 35100413
    36 7pwo:N1 (2.75) BS03 MG ? GO:0003735 ... A8BE02 35100413
    37 7pwo:N2 (2.75) BS01 rna ? GO:0002181 ... A8B8Z6 35100413
    38 7pwo:N2 (2.75) BS02 rna ? GO:0002181 ... A8B8Z6 35100413
    39 7pwo:O1 (2.75) BS01 rna ? GO:0000028 ... E2RU83 35100413
    40 7pwo:O2 (2.75) BS01 rna ? GO:0003729 ... A8BU75 35100413
    41 7pwo:P2 (2.75) BS01 rna ? GO:0002181 ... A8BE76 35100413
    42 7pwo:P2 (2.75) BS02 rna ? GO:0002181 ... A8BE76 35100413
    43 7pwo:Q1 (2.75) BS01 rna ? GO:0000462 ... A8BKC6 35100413
    44 7pwo:Q2 (2.75) BS01 rna ? GO:0003723 ... A8B4T7 35100413
    45 7pwo:R1 (2.75) BS01 rna ? GO:0003735 ... A8BRG5 35100413
    46 7pwo:R2 (2.75) BS01 rna ? GO:0003723 ... A8BH61 35100413
    47 7pwo:R2 (2.75) BS02 rna ? GO:0003723 ... A8BH61 35100413
    48 7pwo:S1 (2.75) BS01 rna ? GO:0003676 ... A8BZ58 35100413
    49 7pwo:S2 (2.75) BS01 rna ? GO:0003735 ... A8BT04 35100413
    50 7pwo:S2 (2.75) BS02 rna ? GO:0003735 ... A8BT04 35100413
    51 7pwo:T1 (2.75) BS01 rna ? GO:0000028 ... A0A644F964 35100413
    52 7pwo:T2 (2.75) BS01 rna ? GO:0003735 ... A8B2Q4 35100413
    53 7pwo:T2 (2.75) BS02 rna ? GO:0003735 ... A8B2Q4 35100413
    54 7pwo:U1 (2.75) BS01 rna ? GO:0003735 ... A8B4G0 35100413
    55 7pwo:U2 (2.75) BS01 rna ? GO:0003735 ... A8BW84 35100413
    56 7pwo:V2 (2.75) BS01 rna ? GO:0003735 ... A8BS37 35100413
    57 7pwo:W1 (2.75) BS01 rna ? GO:0003735 ... E2RU77 35100413
    58 7pwo:W2 (2.75) BS01 rna ? GO:0005730 ... A8BRH7 35100413
    59 7pwo:X1 (2.75) BS01 rna ? GO:0003735 ... A8BS96 35100413
    60 7pwo:X2 (2.75) BS01 rna ? GO:0000027 ... A8BMP6 35100413
    61 7pwo:X2 (2.75) BS02 rna ? GO:0000027 ... A8BMP6 35100413
    62 7pwo:Y1 (2.75) BS01 rna ? GO:0003735 ... A8B593 35100413
    63 7pwo:Y2 (2.75) BS01 rna ? GO:0002181 ... A8BFT3 35100413
    64 7pwo:Y2 (2.75) BS02 rna ? GO:0002181 ... A8BFT3 35100413
    65 7pwo:Z2 (2.75) BS01 rna ? GO:0003735 ... A8B1T3 35100413
    66 7pwo:a1 (2.75) BS01 rna ? GO:0003729 ... A8BQZ7 35100413
    67 7pwo:a2 (2.75) BS01 rna ? GO:0003735 ... A8BZ78 35100413
    68 7pwo:b1 (2.75) BS01 rna ? GO:0003735 ... A8BJL1 35100413
    69 7pwo:b2 (2.75) BS01 rna ? GO:0002181 ... A8BYY2 35100413
    70 7pwo:c1 (2.75) BS01 rna ? GO:0000028 ... A8B4F3 35100413
    71 7pwo:c2 (2.75) BS01 rna ? GO:0003723 ... A8B5N7 35100413
    72 7pwo:d1 (2.75) BS01 rna ? GO:0003735 ... A8B7H6 35100413
    73 7pwo:d2 (2.75) BS01 rna ? GO:0002181 ... A8BMP3 35100413
    74 7pwo:e1 (2.75) BS01 rna ? GO:0003735 ... A0A644F843 35100413
    75 7pwo:e2 (2.75) BS01 rna ? GO:0003735 ... A8BMD9 35100413
    76 7pwo:f2 (2.75) BS01 rna ? GO:0002181 ... A8BKK5 35100413
    77 7pwo:g2 (2.75) BS01 rna ? GO:0003735 ... A8BMF7 35100413
    78 7pwo:h2 (2.75) BS01 rna ? GO:0000463 ... A8BRG7 35100413
    79 7pwo:h2 (2.75) BS02 rna ? GO:0000463 ... A8BRG7 35100413
    80 7pwo:i2 (2.75) BS01 rna ? GO:0002181 ... A8BYA6 35100413
    81 7pwo:j2 (2.75) BS01 rna ? GO:0003723 ... A8BLV7 35100413
    82 7pwo:j2 (2.75) BS02 rna ? GO:0003723 ... A8BLV7 35100413
    83 7pwo:k2 (2.75) BS01 rna ? GO:0003735 ... A8B481 35100413
    84 7pwo:l2 (2.75) BS01 rna ? GO:0003735 ... A0A644EZB9 35100413
    85 7pwo:l2 (2.75) BS02 rna ? GO:0003735 ... A0A644EZB9 35100413
    86 7pwo:m2 (2.75) BS01 rna ? GO:0003735 ... A8BXE1 35100413
    87 7pwo:o2 (2.75) BS01 rna ? GO:0003735 ... A8BQU8 35100413
    88 7pwo:o2 (2.75) BS02 rna ? GO:0003735 ... A8BQU8 35100413
    89 7pwo:o2 (2.75) BS03 MG ? GO:0003735 ... A8BQU8 35100413
    90 7pwo:p2 (2.75) BS01 rna ? GO:0003735 ... A8BN26 35100413
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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