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BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pjz:0 (6.0) BS01 rna ? GO:0000027 ... P0A7N4 34635670
    2 7pjz:1 (6.0) BS01 rna ? GO:0000027 ... P0A7N9 34635670
    3 7pjz:2 (6.0) BS01 rna ? GO:0002181 ... P0A7P5 34635670
    4 7pjz:3 (6.0) BS01 rna ? GO:0002181 ... P0A7Q1 34635670
    5 7pjz:4 (6.0) BS01 rna ? GO:0002181 ... P0A7Q6 34635670
    6 7pjz:5 (6.0) BS01 rna N/A GO:0003735 ... N/A 34635670
    7 7pjz:6 (6.0) BS01 rna N/A GO:0003735 ... N/A 34635670
    8 7pjz:6 (6.0) BS02 ZN N/A GO:0003735 ... N/A 34635670
    9 7pjz:C (6.0) BS01 rna ? GO:0000027 ... P60422 34635670
    10 7pjz:D (6.0) BS01 rna ? GO:0000027 ... P60438 34635670
    11 7pjz:E (6.0) BS01 rna ? GO:0001070 ... P60723 34635670
    12 7pjz:F (6.0) BS01 rna ? GO:0000027 ... P62399 34635670
    13 7pjz:F (6.0) BS02 rna ? GO:0000027 ... P62399 34635670
    14 7pjz:F (6.0) BS03 rna ? GO:0000027 ... P62399 34635670
    15 7pjz:G (6.0) BS01 rna ? GO:0000027 ... P0AG55 34635670
    16 7pjz:H (6.0) BS01 rna ? GO:0002181 ... P0A7R1 34635670
    17 7pjz:I (6.0) BS01 rna ? GO:0000027 ... P0A7J7 34635670
    18 7pjz:J (6.0) BS01 rna ? GO:0002181 ... P0AA10 34635670
    19 7pjz:K (6.0) BS01 rna ? GO:0002181 ... P0ADY3 34635670
    20 7pjz:K (6.0) BS02 rna ? GO:0002181 ... P0ADY3 34635670
    21 7pjz:L (6.0) BS01 rna ? GO:0002181 ... P02413 34635670
    22 7pjz:M (6.0) BS01 rna ? GO:0000027 ... P0ADY7 34635670
    23 7pjz:M (6.0) BS02 rna ? GO:0000027 ... P0ADY7 34635670
    24 7pjz:N (6.0) BS01 rna ? GO:0000027 ... P0AG44 34635670
    25 7pjz:O (6.0) BS01 rna ? GO:0002181 ... P0C018 34635670
    26 7pjz:O (6.0) BS02 rna ? GO:0002181 ... P0C018 34635670
    27 7pjz:P (6.0) BS01 rna ? GO:0000027 ... P0A7K6 34635670
    28 7pjz:P (6.0) BS02 rna ? GO:0000027 ... P0A7K6 34635670
    29 7pjz:Q (6.0) BS01 rna ? GO:0000027 ... P0A7L3 34635670
    30 7pjz:R (6.0) BS01 rna ? GO:0002181 ... P0AG48 34635670
    31 7pjz:S (6.0) BS01 rna ? GO:0002181 ... P61175 34635670
    32 7pjz:T (6.0) BS01 rna ? GO:0000027 ... P0ADZ0 34635670
    33 7pjz:U (6.0) BS01 rna ? GO:0000027 ... P60624 34635670
    34 7pjz:V (6.0) BS01 rna ? GO:0000027 ... P68919 34635670
    35 7pjz:W (6.0) BS01 rna ? GO:0000027 ... P0A7L8 34635670
    36 7pjz:W (6.0) BS02 rna ? GO:0000027 ... P0A7L8 34635670
    37 7pjz:X (6.0) BS01 rna ? GO:0000027 ... P0A7M2 34635670
    38 7pjz:Y (6.0) BS01 rna ? GO:0000027 ... P0A7M6 34635670
    39 7pjz:Z (6.0) BS01 rna ? GO:0000027 ... P0AG51 34635670
    40 7pjz:Z (6.0) BS02 rna ? GO:0000027 ... P0AG51 34635670
    41 7pjz:b (6.0) BS01 rna ? GO:0003735 ... C3TPN2 34635670
    42 7pjz:c (6.0) BS01 rna ? GO:0000028 ... C3SQX2 34635670
    43 7pjz:d (6.0) BS01 rna ? GO:0003723 ... C3SR62 34635670
    44 7pjz:e (6.0) BS01 rna ? GO:0000028 ... C3SR27 34635670
    45 7pjz:f (6.0) BS01 rna ? GO:0002181 ... P02358 34635670
    46 7pjz:g (6.0) BS01 rna ? GO:0000028 ... P02359 34635670
    47 7pjz:h (6.0) BS01 rna ? GO:0000028 ... C3SR12 34635670
    48 7pjz:i (6.0) BS01 rna ? GO:0000028 ... C3SRY2 34635670
    49 7pjz:i (6.0) BS02 rna ? GO:0000028 ... C3SRY2 34635670
    50 7pjz:j (6.0) BS01 rna ? GO:0000028 ... C3SQT7 34635670
    51 7pjz:k (6.0) BS01 rna ? GO:0000028 ... C3SR57 34635670
    52 7pjz:l (6.0) BS01 rna ? GO:0000028 ... C3SQR7 34635670
    53 7pjz:m (6.0) BS01 rna ? GO:0000028 ... C3SR52 34635670
    54 7pjz:n (6.0) BS01 rna ? GO:0003735 ... C3SR07 34635670
    55 7pjz:o (6.0) BS01 rna ? GO:0000028 ... C3SSQ7 34635670
    56 7pjz:o (6.0) BS02 rna ? GO:0000028 ... C3SSQ7 34635670
    57 7pjz:p (6.0) BS01 rna ? GO:0000028 ... C3SYP2 34635670
    58 7pjz:q (6.0) BS01 rna ? GO:0000028 ... C3SQY7 34635670
    59 7pjz:r (6.0) BS01 rna ? GO:0000028 ... C3SFP7 34635670
    60 7pjz:s (6.0) BS01 rna ? GO:0000028 ... C3SQW2 34635670
    61 7pjz:t (6.0) BS01 rna ? GO:0000028 ... C3TRH7 34635670
    62 7pjz:u (6.0) BS01 rna ? GO:0000028 ... C3STZ7 34635670
    63 7pjz:x (6.0) BS01 rna N/A GO:0003746 ... N/A 34635670
    64 7pjz:x (6.0) BS02 rna N/A GO:0003746 ... N/A 34635670
    65 7pjz:x (6.0) BS03 rna N/A GO:0003746 ... N/A 34635670
    66 7pjz:x (6.0) BS04 GDP N/A GO:0003746 ... N/A 34635670
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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