Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pjx:0 (6.5) BS01 rna ? GO:0000027 ... P0A7N4 34635670
    2 7pjx:1 (6.5) BS01 rna ? GO:0000027 ... P0A7N9 34635670
    3 7pjx:2 (6.5) BS01 rna ? GO:0002181 ... P0A7P5 34635670
    4 7pjx:3 (6.5) BS01 rna ? GO:0002181 ... P0A7Q1 34635670
    5 7pjx:4 (6.5) BS01 rna ? GO:0002181 ... P0A7Q6 34635670
    6 7pjx:5 (6.5) BS01 rna N/A GO:0003735 ... N/A 34635670
    7 7pjx:6 (6.5) BS01 rna N/A GO:0003735 ... N/A 34635670
    8 7pjx:C (6.5) BS01 rna ? GO:0000027 ... P60422 34635670
    9 7pjx:C (6.5) BS02 rna ? GO:0000027 ... P60422 34635670
    10 7pjx:D (6.5) BS01 rna ? GO:0000027 ... P60438 34635670
    11 7pjx:E (6.5) BS01 rna ? GO:0001070 ... P60723 34635670
    12 7pjx:F (6.5) BS01 rna ? GO:0000027 ... P62399 34635670
    13 7pjx:F (6.5) BS02 rna ? GO:0000027 ... P62399 34635670
    14 7pjx:G (6.5) BS01 rna ? GO:0000027 ... P0AG55 34635670
    15 7pjx:H (6.5) BS01 rna ? GO:0002181 ... P0A7R1 34635670
    16 7pjx:I (6.5) BS01 rna ? GO:0000027 ... P0A7J7 34635670
    17 7pjx:J (6.5) BS01 rna ? GO:0002181 ... P0AA10 34635670
    18 7pjx:K (6.5) BS01 rna ? GO:0002181 ... P0ADY3 34635670
    19 7pjx:K (6.5) BS02 rna ? GO:0002181 ... P0ADY3 34635670
    20 7pjx:L (6.5) BS01 rna ? GO:0002181 ... P02413 34635670
    21 7pjx:M (6.5) BS01 rna ? GO:0000027 ... P0ADY7 34635670
    22 7pjx:M (6.5) BS02 rna ? GO:0000027 ... P0ADY7 34635670
    23 7pjx:M (6.5) BS03 rna ? GO:0000027 ... P0ADY7 34635670
    24 7pjx:N (6.5) BS01 rna ? GO:0000027 ... P0AG44 34635670
    25 7pjx:O (6.5) BS01 rna ? GO:0002181 ... P0C018 34635670
    26 7pjx:O (6.5) BS02 rna ? GO:0002181 ... P0C018 34635670
    27 7pjx:P (6.5) BS01 rna ? GO:0000027 ... P0A7K6 34635670
    28 7pjx:P (6.5) BS02 rna ? GO:0000027 ... P0A7K6 34635670
    29 7pjx:Q (6.5) BS01 rna ? GO:0000027 ... P0A7L3 34635670
    30 7pjx:R (6.5) BS01 rna ? GO:0002181 ... P0AG48 34635670
    31 7pjx:S (6.5) BS01 rna ? GO:0002181 ... P61175 34635670
    32 7pjx:T (6.5) BS01 rna ? GO:0000027 ... P0ADZ0 34635670
    33 7pjx:U (6.5) BS01 rna ? GO:0000027 ... P60624 34635670
    34 7pjx:V (6.5) BS01 rna ? GO:0000027 ... P68919 34635670
    35 7pjx:W (6.5) BS01 rna ? GO:0000027 ... P0A7L8 34635670
    36 7pjx:W (6.5) BS02 rna ? GO:0000027 ... P0A7L8 34635670
    37 7pjx:X (6.5) BS01 rna ? GO:0000027 ... P0A7M2 34635670
    38 7pjx:Y (6.5) BS01 rna ? GO:0000027 ... P0A7M6 34635670
    39 7pjx:Z (6.5) BS01 rna ? GO:0000027 ... P0AG51 34635670
    40 7pjx:Z (6.5) BS02 rna ? GO:0000027 ... P0AG51 34635670
    41 7pjx:b (6.5) BS01 rna ? GO:0003735 ... C3TPN2 34635670
    42 7pjx:c (6.5) BS01 rna ? GO:0000028 ... C3SQX2 34635670
    43 7pjx:d (6.5) BS01 rna ? GO:0003723 ... C3SR62 34635670
    44 7pjx:e (6.5) BS01 rna ? GO:0000028 ... C3SR27 34635670
    45 7pjx:f (6.5) BS01 rna ? GO:0002181 ... P02358 34635670
    46 7pjx:g (6.5) BS01 rna ? GO:0000028 ... P02359 34635670
    47 7pjx:g (6.5) BS02 rna ? GO:0000028 ... P02359 34635670
    48 7pjx:h (6.5) BS01 rna ? GO:0000028 ... C3SR12 34635670
    49 7pjx:i (6.5) BS01 rna ? GO:0000028 ... C3SRY2 34635670
    50 7pjx:i (6.5) BS02 rna ? GO:0000028 ... C3SRY2 34635670
    51 7pjx:j (6.5) BS01 rna ? GO:0000028 ... C3SQT7 34635670
    52 7pjx:k (6.5) BS01 rna ? GO:0000028 ... C3SR57 34635670
    53 7pjx:l (6.5) BS01 rna ? GO:0000028 ... C3SQR7 34635670
    54 7pjx:m (6.5) BS01 rna ? GO:0000028 ... C3SR52 34635670
    55 7pjx:n (6.5) BS01 rna ? GO:0003735 ... C3SR07 34635670
    56 7pjx:o (6.5) BS01 rna ? GO:0000028 ... C3SSQ7 34635670
    57 7pjx:o (6.5) BS02 rna ? GO:0000028 ... C3SSQ7 34635670
    58 7pjx:p (6.5) BS01 rna ? GO:0000028 ... C3SYP2 34635670
    59 7pjx:q (6.5) BS01 rna ? GO:0000028 ... C3SQY7 34635670
    60 7pjx:r (6.5) BS01 rna ? GO:0000028 ... C3SFP7 34635670
    61 7pjx:s (6.5) BS01 rna ? GO:0000028 ... C3SQW2 34635670
    62 7pjx:t (6.5) BS01 rna ? GO:0000028 ... C3TRH7 34635670
    63 7pjx:u (6.5) BS01 rna ? GO:0000028 ... C3STZ7 34635670
    64 7pjx:x (6.5) BS01 rna N/A GO:0003746 ... N/A 34635670
    65 7pjx:x (6.5) BS02 rna N/A GO:0003746 ... N/A 34635670
    66 7pjx:x (6.5) BS03 GDP N/A GO:0003746 ... N/A 34635670
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417