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BioLiP
Download all results in tab-seperated text for 74 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pjv:0 (3.1) BS01 rna ? GO:0000027 ... P0A7N4 34635670
    2 7pjv:1 (3.1) BS01 rna ? GO:0000027 ... P0A7N9 34635670
    3 7pjv:2 (3.1) BS01 rna ? GO:0002181 ... P0A7P5 34635670
    4 7pjv:3 (3.1) BS01 rna ? GO:0002181 ... P0A7Q1 34635670
    5 7pjv:4 (3.1) BS01 rna ? GO:0002181 ... P0A7Q6 34635670
    6 7pjv:4 (3.1) BS02 ZN ? GO:0002181 ... P0A7Q6 34635670
    7 7pjv:5 (3.1) BS01 rna ? GO:0002181 ... P0A7J3 34635670
    8 7pjv:6 (3.1) BS01 rna ? GO:0002181 ... P0A7M9 34635670
    9 7pjv:6 (3.1) BS02 ZN ? GO:0002181 ... P0A7M9 34635670
    10 7pjv:C (3.1) BS01 rna ? GO:0000027 ... P60422 34635670
    11 7pjv:C (3.1) BS02 rna ? GO:0000027 ... P60422 34635670
    12 7pjv:C (3.1) BS03 MG ? GO:0000027 ... P60422 34635670
    13 7pjv:C (3.1) BS04 MG ? GO:0000027 ... P60422 34635670
    14 7pjv:D (3.1) BS01 rna ? GO:0000027 ... P60438 34635670
    15 7pjv:E (3.1) BS01 rna ? GO:0001070 ... P60723 34635670
    16 7pjv:F (3.1) BS01 rna ? GO:0000027 ... P62399 34635670
    17 7pjv:F (3.1) BS02 rna ? GO:0000027 ... P62399 34635670
    18 7pjv:G (3.1) BS01 rna ? GO:0000027 ... P0AG55 34635670
    19 7pjv:H (3.1) BS01 rna ? GO:0002181 ... P0A7R1 34635670
    20 7pjv:I (3.1) BS01 rna ? GO:0000027 ... P0A7J7 34635670
    21 7pjv:J (3.1) BS01 rna ? GO:0002181 ... P0AA10 34635670
    22 7pjv:K (3.1) BS01 rna ? GO:0002181 ... P0ADY3 34635670
    23 7pjv:K (3.1) BS02 rna ? GO:0002181 ... P0ADY3 34635670
    24 7pjv:L (3.1) BS01 rna ? GO:0002181 ... P02413 34635670
    25 7pjv:M (3.1) BS01 rna ? GO:0000027 ... P0ADY7 34635670
    26 7pjv:M (3.1) BS02 rna ? GO:0000027 ... P0ADY7 34635670
    27 7pjv:M (3.1) BS03 rna ? GO:0000027 ... P0ADY7 34635670
    28 7pjv:N (3.1) BS01 rna ? GO:0000027 ... P0AG44 34635670
    29 7pjv:O (3.1) BS01 rna ? GO:0002181 ... P0C018 34635670
    30 7pjv:O (3.1) BS02 rna ? GO:0002181 ... P0C018 34635670
    31 7pjv:P (3.1) BS01 rna ? GO:0000027 ... P0A7K6 34635670
    32 7pjv:P (3.1) BS02 rna ? GO:0000027 ... P0A7K6 34635670
    33 7pjv:P (3.1) BS03 MG ? GO:0000027 ... P0A7K6 34635670
    34 7pjv:Q (3.1) BS01 rna ? GO:0000027 ... P0A7L3 34635670
    35 7pjv:R (3.1) BS01 rna ? GO:0002181 ... P0AG48 34635670
    36 7pjv:S (3.1) BS01 rna ? GO:0002181 ... P61175 34635670
    37 7pjv:T (3.1) BS01 rna ? GO:0000027 ... P0ADZ0 34635670
    38 7pjv:U (3.1) BS01 rna ? GO:0000027 ... P60624 34635670
    39 7pjv:V (3.1) BS01 rna ? GO:0000027 ... P68919 34635670
    40 7pjv:W (3.1) BS01 rna ? GO:0000027 ... P0A7L8 34635670
    41 7pjv:W (3.1) BS02 rna ? GO:0000027 ... P0A7L8 34635670
    42 7pjv:X (3.1) BS01 rna ? GO:0000027 ... P0A7M2 34635670
    43 7pjv:Y (3.1) BS01 rna ? GO:0000027 ... P0A7M6 34635670
    44 7pjv:Z (3.1) BS01 rna ? GO:0000027 ... P0AG51 34635670
    45 7pjv:Z (3.1) BS02 rna ? GO:0000027 ... P0AG51 34635670
    46 7pjv:b (3.1) BS01 rna ? GO:0000028 ... P0A7V0 34635670
    47 7pjv:c (3.1) BS01 rna ? GO:0000028 ... P0A7V3 34635670
    48 7pjv:d (3.1) BS01 rna ? GO:0000028 ... P0A7V8 34635670
    49 7pjv:e (3.1) BS01 rna ? GO:0000028 ... P0A7W1 34635670
    50 7pjv:f (3.1) BS01 rna ? GO:0002181 ... P02358 34635670
    51 7pjv:g (3.1) BS01 rna ? GO:0000028 ... P02359 34635670
    52 7pjv:g (3.1) BS02 rna ? GO:0000028 ... P02359 34635670
    53 7pjv:h (3.1) BS01 rna ? GO:0000028 ... P0A7W7 34635670
    54 7pjv:i (3.1) BS01 rna ? GO:0000049 ... P0A7X3 34635670
    55 7pjv:i (3.1) BS02 rna ? GO:0000049 ... P0A7X3 34635670
    56 7pjv:j (3.1) BS01 rna ? GO:0000049 ... P0A7R5 34635670
    57 7pjv:k (3.1) BS01 rna ? GO:0002181 ... P0A7R9 34635670
    58 7pjv:l (3.1) BS01 rna ? GO:0000049 ... P0A7S3 34635670
    59 7pjv:m (3.1) BS01 rna ? GO:0000049 ... P0A7S9 34635670
    60 7pjv:m (3.1) BS02 MG ? GO:0000049 ... P0A7S9 34635670
    61 7pjv:n (3.1) BS01 rna ? GO:0003735 ... P0AG59 34635670
    62 7pjv:n (3.1) BS02 MG ? GO:0003735 ... P0AG59 34635670
    63 7pjv:o (3.1) BS01 rna ? GO:0000028 ... P0ADZ4 34635670
    64 7pjv:o (3.1) BS02 rna ? GO:0000028 ... P0ADZ4 34635670
    65 7pjv:p (3.1) BS01 rna ? GO:0000028 ... P0A7T3 34635670
    66 7pjv:q (3.1) BS01 rna ? GO:0000028 ... P0AG63 34635670
    67 7pjv:r (3.1) BS01 rna N/A GO:0003735 ... N/A 34635670
    68 7pjv:s (3.1) BS01 rna ? GO:0000028 ... P0A7U3 34635670
    69 7pjv:t (3.1) BS01 rna ? GO:0000028 ... P0A7U7 34635670
    70 7pjv:u (3.1) BS01 rna ? GO:0000028 ... P68679 34635670
    71 7pjv:x (3.1) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 34635670
    72 7pjv:x (3.1) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 34635670
    73 7pjv:x (3.1) BS03 GDP 3.6.5.- GO:0003746 ... P0A6M8 34635670
    74 7pjv:x (3.1) BS04 MG 3.6.5.- GO:0003746 ... P0A6M8 34635670
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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