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BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pjt:0 (6.0) BS01 rna ? GO:0000027 ... P0A7N4 34635670
    2 7pjt:1 (6.0) BS01 rna ? GO:0000027 ... P0A7N9 34635670
    3 7pjt:2 (6.0) BS01 rna ? GO:0002181 ... P0A7P5 34635670
    4 7pjt:3 (6.0) BS01 rna ? GO:0002181 ... P0A7Q1 34635670
    5 7pjt:4 (6.0) BS01 rna ? GO:0002181 ... P0A7Q6 34635670
    6 7pjt:4 (6.0) BS02 ZN ? GO:0002181 ... P0A7Q6 34635670
    7 7pjt:5 (6.0) BS01 rna N/A GO:0003735 ... N/A 34635670
    8 7pjt:6 (6.0) BS01 rna N/A GO:0003735 ... N/A 34635670
    9 7pjt:6 (6.0) BS02 ZN N/A GO:0003735 ... N/A 34635670
    10 7pjt:C (6.0) BS01 rna ? GO:0000027 ... P60422 34635670
    11 7pjt:C (6.0) BS02 rna ? GO:0000027 ... P60422 34635670
    12 7pjt:D (6.0) BS01 rna ? GO:0000027 ... P60438 34635670
    13 7pjt:E (6.0) BS01 rna ? GO:0001070 ... P60723 34635670
    14 7pjt:F (6.0) BS01 rna ? GO:0000027 ... P62399 34635670
    15 7pjt:F (6.0) BS02 rna ? GO:0000027 ... P62399 34635670
    16 7pjt:G (6.0) BS01 rna ? GO:0000027 ... P0AG55 34635670
    17 7pjt:H (6.0) BS01 rna ? GO:0002181 ... P0A7R1 34635670
    18 7pjt:I (6.0) BS01 rna ? GO:0000027 ... P0A7J7 34635670
    19 7pjt:J (6.0) BS01 rna ? GO:0002181 ... P0AA10 34635670
    20 7pjt:K (6.0) BS01 rna ? GO:0002181 ... P0ADY3 34635670
    21 7pjt:K (6.0) BS02 rna ? GO:0002181 ... P0ADY3 34635670
    22 7pjt:L (6.0) BS01 rna ? GO:0002181 ... P02413 34635670
    23 7pjt:M (6.0) BS01 rna ? GO:0000027 ... P0ADY7 34635670
    24 7pjt:M (6.0) BS02 rna ? GO:0000027 ... P0ADY7 34635670
    25 7pjt:M (6.0) BS03 rna ? GO:0000027 ... P0ADY7 34635670
    26 7pjt:N (6.0) BS01 rna ? GO:0000027 ... P0AG44 34635670
    27 7pjt:O (6.0) BS01 rna ? GO:0002181 ... P0C018 34635670
    28 7pjt:O (6.0) BS02 rna ? GO:0002181 ... P0C018 34635670
    29 7pjt:P (6.0) BS01 rna ? GO:0000027 ... P0A7K6 34635670
    30 7pjt:P (6.0) BS02 rna ? GO:0000027 ... P0A7K6 34635670
    31 7pjt:Q (6.0) BS01 rna ? GO:0000027 ... P0A7L3 34635670
    32 7pjt:R (6.0) BS01 rna ? GO:0002181 ... P0AG48 34635670
    33 7pjt:S (6.0) BS01 rna ? GO:0002181 ... P61175 34635670
    34 7pjt:T (6.0) BS01 rna ? GO:0000027 ... P0ADZ0 34635670
    35 7pjt:U (6.0) BS01 rna ? GO:0000027 ... P60624 34635670
    36 7pjt:V (6.0) BS01 rna ? GO:0000027 ... P68919 34635670
    37 7pjt:W (6.0) BS01 rna ? GO:0000027 ... P0A7L8 34635670
    38 7pjt:W (6.0) BS02 rna ? GO:0000027 ... P0A7L8 34635670
    39 7pjt:X (6.0) BS01 rna ? GO:0000027 ... P0A7M2 34635670
    40 7pjt:X (6.0) BS02 rna ? GO:0000027 ... P0A7M2 34635670
    41 7pjt:Y (6.0) BS01 rna ? GO:0000027 ... P0A7M6 34635670
    42 7pjt:Z (6.0) BS01 rna ? GO:0000027 ... P0AG51 34635670
    43 7pjt:b (6.0) BS01 rna ? GO:0003735 ... C3TPN2 34635670
    44 7pjt:c (6.0) BS01 rna ? GO:0000028 ... C3SQX2 34635670
    45 7pjt:d (6.0) BS01 rna ? GO:0003723 ... C3SR62 34635670
    46 7pjt:e (6.0) BS01 rna ? GO:0000028 ... C3SR27 34635670
    47 7pjt:f (6.0) BS01 rna ? GO:0002181 ... P02358 34635670
    48 7pjt:g (6.0) BS01 rna ? GO:0000028 ... P02359 34635670
    49 7pjt:h (6.0) BS01 rna ? GO:0000028 ... C3SR12 34635670
    50 7pjt:i (6.0) BS01 rna ? GO:0000028 ... C3SRY2 34635670
    51 7pjt:j (6.0) BS01 rna ? GO:0000028 ... C3SQT7 34635670
    52 7pjt:k (6.0) BS01 rna ? GO:0000028 ... C3SR57 34635670
    53 7pjt:l (6.0) BS01 rna ? GO:0000028 ... C3SQR7 34635670
    54 7pjt:m (6.0) BS01 rna ? GO:0000028 ... C3SR52 34635670
    55 7pjt:n (6.0) BS01 rna ? GO:0003735 ... C3SR07 34635670
    56 7pjt:o (6.0) BS01 rna ? GO:0000028 ... C3SSQ7 34635670
    57 7pjt:p (6.0) BS01 rna ? GO:0000028 ... C3SYP2 34635670
    58 7pjt:q (6.0) BS01 rna ? GO:0000028 ... C3SQY7 34635670
    59 7pjt:r (6.0) BS01 rna ? GO:0000028 ... C3SFP7 34635670
    60 7pjt:s (6.0) BS01 rna ? GO:0000028 ... C3SQW2 34635670
    61 7pjt:t (6.0) BS01 rna ? GO:0000028 ... C3TRH7 34635670
    62 7pjt:u (6.0) BS01 rna ? GO:0000028 ... C3STZ7 34635670
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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