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BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7p3k:0 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 34403461
    2 7p3k:1 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 34403461
    3 7p3k:2 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 34403461
    4 7p3k:3 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 34403461
    5 7p3k:3 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 34403461
    6 7p3k:4 (2.9) BS01 rna ? GO:0002181 ... P0A7M9 34403461
    7 7p3k:4 (2.9) BS02 ZN ? GO:0002181 ... P0A7M9 34403461
    8 7p3k:B (2.9) BS01 rna ? GO:0000028 ... P0A7V0 34403461
    9 7p3k:C (2.9) BS01 rna ? GO:0000028 ... P0A7V3 34403461
    10 7p3k:D (2.9) BS01 rna ? GO:0000028 ... P0A7V8 34403461
    11 7p3k:E (2.9) BS01 rna ? GO:0000028 ... P0A7W1 34403461
    12 7p3k:F (2.9) BS01 rna ? GO:0002181 ... P02358 34403461
    13 7p3k:G (2.9) BS01 rna ? GO:0000028 ... P02359 34403461
    14 7p3k:H (2.9) BS01 rna ? GO:0000028 ... P0A7W7 34403461
    15 7p3k:I (2.9) BS01 rna ? GO:0000049 ... P0A7X3 34403461
    16 7p3k:J (2.9) BS01 rna ? GO:0000049 ... P0A7R5 34403461
    17 7p3k:K (2.9) BS01 rna N/A GO:0003735 ... N/A 34403461
    18 7p3k:L (2.9) BS01 rna ? GO:0000049 ... P0A7S3 34403461
    19 7p3k:M (2.9) BS01 rna ? GO:0000049 ... P0A7S9 34403461
    20 7p3k:M (2.9) BS02 rna ? GO:0000049 ... P0A7S9 34403461
    21 7p3k:N (2.9) BS01 rna ? GO:0000028 ... P0AG59 34403461
    22 7p3k:O (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 34403461
    23 7p3k:O (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 34403461
    24 7p3k:P (2.9) BS01 rna ? GO:0000028 ... P0A7T3 34403461
    25 7p3k:Q (2.9) BS01 rna ? GO:0000028 ... P0AG63 34403461
    26 7p3k:R (2.9) BS01 rna ? GO:0002181 ... P0A7T7 34403461
    27 7p3k:S (2.9) BS01 rna ? GO:0000028 ... P0A7U3 34403461
    28 7p3k:T (2.9) BS01 rna ? GO:0000028 ... P0A7U7 34403461
    29 7p3k:U (2.9) BS01 rna ? GO:0000028 ... P68679 34403461
    30 7p3k:c (2.9) BS01 rna ? GO:0000027 ... P60422 34403461
    31 7p3k:d (2.9) BS01 rna ? GO:0000027 ... P60438 34403461
    32 7p3k:e (2.9) BS01 rna ? GO:0001070 ... P60723 34403461
    33 7p3k:f (2.9) BS01 rna ? GO:0000027 ... P62399 34403461
    34 7p3k:f (2.9) BS02 rna ? GO:0000027 ... P62399 34403461
    35 7p3k:f (2.9) BS03 rna ? GO:0000027 ... P62399 34403461
    36 7p3k:g (2.9) BS01 rna ? GO:0000027 ... P0AG55 34403461
    37 7p3k:h (2.9) BS01 rna ? GO:0002181 ... P0A7R1 34403461
    38 7p3k:i (2.9) BS01 rna ? GO:0002181 ... P0AA10 34403461
    39 7p3k:j (2.9) BS01 rna ? GO:0002181 ... P0ADY3 34403461
    40 7p3k:k (2.9) BS01 rna ? GO:0002181 ... P02413 34403461
    41 7p3k:l (2.9) BS01 rna ? GO:0000027 ... P0ADY7 34403461
    42 7p3k:l (2.9) BS02 rna ? GO:0000027 ... P0ADY7 34403461
    43 7p3k:m (2.9) BS01 rna ? GO:0000027 ... P0AG44 34403461
    44 7p3k:n (2.9) BS01 rna ? GO:0002181 ... P0C018 34403461
    45 7p3k:n (2.9) BS02 rna ? GO:0002181 ... P0C018 34403461
    46 7p3k:o (2.9) BS01 rna ? GO:0000027 ... P0A7K6 34403461
    47 7p3k:o (2.9) BS02 rna ? GO:0000027 ... P0A7K6 34403461
    48 7p3k:p (2.9) BS01 rna ? GO:0000027 ... P0A7L3 34403461
    49 7p3k:q (2.9) BS01 rna ? GO:0002181 ... P0AG48 34403461
    50 7p3k:r (2.9) BS01 rna ? GO:0002181 ... P61175 34403461
    51 7p3k:s (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 34403461
    52 7p3k:t (2.9) BS01 rna ? GO:0000027 ... P60624 34403461
    53 7p3k:u (2.9) BS01 rna ? GO:0000027 ... P68919 34403461
    54 7p3k:v (2.9) BS01 rna ? GO:0000027 ... P0A7L8 34403461
    55 7p3k:w (2.9) BS01 rna ? GO:0000027 ... P0A7M2 34403461
    56 7p3k:x (2.9) BS01 rna ? GO:0000027 ... P0A7M6 34403461
    57 7p3k:y (2.9) BS01 rna ? GO:0000027 ... P0AG51 34403461
    58 7p3k:z (2.9) BS01 rna ? GO:0000027 ... P0A7N4 34403461
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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