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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7okx:A (3.3) BS01 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 34265249
    2 7okx:A (3.3) BS02 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 34265249
    3 7okx:A (3.3) BS03 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 34265249
    4 7okx:A (3.3) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 34265249
    5 7okx:A (3.3) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 34265249
    6 7okx:B (3.3) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 34265249
    7 7okx:B (3.3) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 34265249
    8 7okx:B (3.3) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 34265249
    9 7okx:C (3.3) BS01 ZN ? GO:0000428 ... I3LCH3 34265249
    10 7okx:E (3.3) BS01 dna ? GO:0001054 ... I3LSI7 34265249
    11 7okx:I (3.3) BS01 ZN ? GO:0000428 ... P60899 34265249
    12 7okx:I (3.3) BS02 ZN ? GO:0000428 ... P60899 34265249
    13 7okx:J (3.3) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 34265249
    14 7okx:L (3.3) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 34265249
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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