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BioLiP
Download all results in tab-seperated text for 52 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7oid:0 (3.7) BS01 rna ? GO:0003723 ... Q9BYC8 34315873
    2 7oid:0 (3.7) BS02 ZN ? GO:0003723 ... Q9BYC8 34315873
    3 7oid:1 (3.7) BS01 rna ? GO:0003735 ... O75394 34315873
    4 7oid:2 (3.7) BS01 rna ? GO:0003735 ... Q9BQ48 34315873
    5 7oid:3 (3.7) BS01 rna ? GO:0003735 ... Q9NZE8 34315873
    6 7oid:4 (3.7) BS01 rna ? GO:0003735 ... Q9P0J6 34315873
    7 7oid:5 (3.7) BS01 rna ? GO:0003723 ... Q9BZE1 34315873
    8 7oid:6 (3.7) BS01 rna ? GO:0005515 ... Q96DV4 34315873
    9 7oid:6 (3.7) BS02 rna ? GO:0005515 ... Q96DV4 34315873
    10 7oid:8 (3.7) BS01 rna ? GO:0003723 ... Q9NQ50 34315873
    11 7oid:9 (3.7) BS01 rna ? GO:0003723 ... Q8IXM3 34315873
    12 7oid:D (3.7) BS01 rna ? GO:0003723 ... Q5T653 34315873
    13 7oid:E (3.7) BS01 rna ? GO:0003723 ... P09001 34315873
    14 7oid:F (3.7) BS01 rna ? GO:0003723 ... Q9BYD3 34315873
    15 7oid:H (3.7) BS01 rna ? GO:0003723 ... Q9BYD2 34315873
    16 7oid:I (3.7) BS01 peptide ? GO:0003723 ... Q7Z7H8 34315873
    17 7oid:I (3.7) BS02 rna ? GO:0003723 ... Q7Z7H8 34315873
    18 7oid:J (3.7) BS01 rna ? GO:0003723 ... Q9Y3B7 34315873
    19 7oid:K (3.7) BS01 rna ? GO:0003723 ... Q9BYD1 34315873
    20 7oid:L (3.7) BS01 rna ? GO:0003723 ... Q6P1L8 34315873
    21 7oid:M (3.7) BS01 rna ? GO:0003723 ... Q9P015 34315873
    22 7oid:N (3.7) BS01 peptide ? GO:0003735 ... Q9NX20 34315873
    23 7oid:N (3.7) BS02 rna ? GO:0003735 ... Q9NX20 34315873
    24 7oid:O (3.7) BS01 rna ? GO:0003735 ... Q9NRX2 34315873
    25 7oid:P (3.7) BS01 rna ? GO:0003723 ... Q9H0U6 34315873
    26 7oid:Q (3.7) BS01 rna ? GO:0003735 ... P49406 34315873
    27 7oid:R (3.7) BS01 rna ? GO:0003723 ... Q9BYC9 34315873
    28 7oid:S (3.7) BS01 rna ? GO:0003723 ... Q7Z2W9 34315873
    29 7oid:T (3.7) BS01 rna ? GO:0003723 ... Q9NWU5 34315873
    30 7oid:U (3.7) BS01 rna ? GO:0001650 ... Q16540 34315873
    31 7oid:V (3.7) BS01 rna ? GO:0003723 ... Q96A35 34315873
    32 7oid:W (3.7) BS01 rna ? GO:0003723 ... Q9P0M9 34315873
    33 7oid:X (3.7) BS01 rna ? GO:0003723 ... Q13084 34315873
    34 7oid:Y (3.7) BS01 rna ? GO:0003674 ... Q9HD33 34315873
    35 7oid:Z (3.7) BS01 rna ? GO:0003735 ... Q8TCC3 34315873
    36 7oid:a (3.7) BS01 rna ? GO:0003723 ... Q9Y6G3 34315873
    37 7oid:b (3.7) BS01 rna ? GO:0003723 ... Q8N983 34315873
    38 7oid:c (3.7) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 34315873
    39 7oid:d (3.7) BS01 rna ? GO:0003723 ... Q9BRJ2 34315873
    40 7oid:f (3.7) BS01 rna ? GO:0005515 ... Q96GC5 34315873
    41 7oid:f (3.7) BS02 rna ? GO:0005515 ... Q96GC5 34315873
    42 7oid:g (3.7) BS01 rna ? GO:0003735 ... Q13405 34315873
    43 7oid:i (3.7) BS01 rna ? GO:0003735 ... Q4U2R6 34315873
    44 7oid:j (3.7) BS01 rna ? GO:0003735 ... Q86TS9 34315873
    45 7oid:m (3.7) BS01 rna ? GO:0003735 ... Q7Z7F7 34315873
    46 7oid:o (3.7) BS01 rna ? GO:0003735 ... Q9BQC6 34315873
    47 7oid:q (3.7) BS01 rna ? GO:0005515 ... Q8TAE8 34315873
    48 7oid:q (3.7) BS02 rna ? GO:0005515 ... Q8TAE8 34315873
    49 7oid:r (3.7) BS01 rna ? GO:0003735 ... Q9NVS2 34315873
    50 7oid:s (3.7) BS01 rna ? GO:0003723 ... Q9NP92 34315873
    51 7oid:u (3.7) BS01 rna ? GO:0005515 ... Q96EH3 34315873
    52 7oid:v (3.7) BS01 PNS ? GO:0000266 ... L0R8F8 34315873
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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