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BioLiP
Download all results in tab-seperated text for 46 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7oib:0 (3.3) BS01 rna ? GO:0003723 ... Q9BYC8 34315873
    2 7oib:0 (3.3) BS02 ZN ? GO:0003723 ... Q9BYC8 34315873
    3 7oib:1 (3.3) BS01 rna ? GO:0003735 ... O75394 34315873
    4 7oib:2 (3.3) BS01 rna ? GO:0003735 ... Q9BQ48 34315873
    5 7oib:3 (3.3) BS01 rna ? GO:0003735 ... Q9NZE8 34315873
    6 7oib:5 (3.3) BS01 rna ? GO:0003723 ... Q9BZE1 34315873
    7 7oib:6 (3.3) BS01 rna ? GO:0005515 ... Q96DV4 34315873
    8 7oib:6 (3.3) BS02 rna ? GO:0005515 ... Q96DV4 34315873
    9 7oib:8 (3.3) BS01 rna ? GO:0003723 ... Q9NQ50 34315873
    10 7oib:9 (3.3) BS01 rna ? GO:0003723 ... Q8IXM3 34315873
    11 7oib:D (3.3) BS01 rna ? GO:0003723 ... Q5T653 34315873
    12 7oib:E (3.3) BS01 rna ? GO:0003723 ... P09001 34315873
    13 7oib:F (3.3) BS01 rna ? GO:0003723 ... Q9BYD3 34315873
    14 7oib:H (3.3) BS01 rna ? GO:0003723 ... Q9BYD2 34315873
    15 7oib:I (3.3) BS01 peptide ? GO:0003723 ... Q7Z7H8 34315873
    16 7oib:I (3.3) BS02 rna ? GO:0003723 ... Q7Z7H8 34315873
    17 7oib:J (3.3) BS01 rna ? GO:0003723 ... Q9Y3B7 34315873
    18 7oib:K (3.3) BS01 rna ? GO:0003723 ... Q9BYD1 34315873
    19 7oib:L (3.3) BS01 rna ? GO:0003723 ... Q6P1L8 34315873
    20 7oib:M (3.3) BS01 rna ? GO:0003723 ... Q9P015 34315873
    21 7oib:N (3.3) BS01 rna ? GO:0003735 ... Q9NX20 34315873
    22 7oib:O (3.3) BS01 rna ? GO:0003735 ... Q9NRX2 34315873
    23 7oib:P (3.3) BS01 rna ? GO:0003723 ... Q9H0U6 34315873
    24 7oib:P (3.3) BS02 rna ? GO:0003723 ... Q9H0U6 34315873
    25 7oib:Q (3.3) BS01 rna ? GO:0003735 ... P49406 34315873
    26 7oib:R (3.3) BS01 rna ? GO:0003723 ... Q9BYC9 34315873
    27 7oib:S (3.3) BS01 rna ? GO:0003723 ... Q7Z2W9 34315873
    28 7oib:T (3.3) BS01 rna ? GO:0003723 ... Q9NWU5 34315873
    29 7oib:U (3.3) BS01 rna ? GO:0001650 ... Q16540 34315873
    30 7oib:V (3.3) BS01 rna ? GO:0003723 ... Q96A35 34315873
    31 7oib:W (3.3) BS01 rna ? GO:0003723 ... Q9P0M9 34315873
    32 7oib:X (3.3) BS01 rna ? GO:0003723 ... Q13084 34315873
    33 7oib:Y (3.3) BS01 rna ? GO:0003674 ... Q9HD33 34315873
    34 7oib:Z (3.3) BS01 rna ? GO:0003735 ... Q8TCC3 34315873
    35 7oib:a (3.3) BS01 rna ? GO:0003723 ... Q9Y6G3 34315873
    36 7oib:b (3.3) BS01 rna ? GO:0003723 ... Q8N983 34315873
    37 7oib:c (3.3) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 34315873
    38 7oib:d (3.3) BS01 rna ? GO:0003723 ... Q9BRJ2 34315873
    39 7oib:f (3.3) BS01 rna ? GO:0005515 ... Q96GC5 34315873
    40 7oib:f (3.3) BS02 rna ? GO:0005515 ... Q96GC5 34315873
    41 7oib:g (3.3) BS01 rna ? GO:0003735 ... Q13405 34315873
    42 7oib:i (3.3) BS01 rna ? GO:0003735 ... Q4U2R6 34315873
    43 7oib:j (3.3) BS01 rna ? GO:0003735 ... Q86TS9 34315873
    44 7oib:o (3.3) BS01 rna ? GO:0003735 ... Q9BQC6 34315873
    45 7oib:r (3.3) BS01 rna ? GO:0003735 ... Q9NVS2 34315873
    46 7oib:s (3.3) BS01 rna ? GO:0003723 ... Q9NP92 34315873
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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