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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7nww:C (3.05) BS01 rna ? GO:0000027 ... P60422 34994471
    2 7nww:D (3.05) BS01 rna ? GO:0000027 ... P60438 34994471
    3 7nww:E (3.05) BS01 rna ? GO:0001070 ... P60723 34994471
    4 7nww:E (3.05) BS02 peptide ? GO:0001070 ... P60723 34994471
    5 7nww:F (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    6 7nww:F (3.05) BS02 rna N/A GO:0003735 ... N/A 34994471
    7 7nww:F (3.05) BS03 rna N/A GO:0003735 ... N/A 34994471
    8 7nww:G (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    9 7nww:H (3.05) BS01 rna ? GO:0002181 ... P0A7R1 34994471
    10 7nww:I (3.05) BS01 rna ? GO:0002181 ... P0AA10 34994471
    11 7nww:J (3.05) BS01 rna ? GO:0002181 ... P0ADY3 34994471
    12 7nww:J (3.05) BS02 rna ? GO:0002181 ... P0ADY3 34994471
    13 7nww:K (3.05) BS01 rna ? GO:0002181 ... P02413 34994471
    14 7nww:L (3.05) BS01 rna ? GO:0000027 ... P0ADY7 34994471
    15 7nww:M (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    16 7nww:N (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    17 7nww:N (3.05) BS02 rna N/A GO:0003735 ... N/A 34994471
    18 7nww:O (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    19 7nww:O (3.05) BS02 rna N/A GO:0003735 ... N/A 34994471
    20 7nww:P (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    21 7nww:Q (3.05) BS01 rna ? GO:0002181 ... P0AG48 34994471
    22 7nww:R (3.05) BS01 rna ? GO:0002181 ... P61175 34994471
    23 7nww:R (3.05) BS02 peptide ? GO:0002181 ... P61175 34994471
    24 7nww:S (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    25 7nww:T (3.05) BS01 rna N/A GO:0003723 ... N/A 34994471
    26 7nww:U (3.05) BS01 rna ? GO:0000027 ... P68919 34994471
    27 7nww:V (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    28 7nww:V (3.05) BS02 rna N/A GO:0003735 ... N/A 34994471
    29 7nww:W (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    30 7nww:X (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    31 7nww:Y (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    32 7nww:Z (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    33 7nww:Z (3.05) BS02 rna N/A GO:0003735 ... N/A 34994471
    34 7nww:Z (3.05) BS03 ZN N/A GO:0003735 ... N/A 34994471
    35 7nww:a (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    36 7nww:b (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    37 7nww:c (3.05) BS01 rna ? GO:0002181 ... P0A7P5 34994471
    38 7nww:d (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    39 7nww:e (3.05) BS01 rna ? GO:0002181 ... P0A7Q6 34994471
    40 7nww:e (3.05) BS02 ZN ? GO:0002181 ... P0A7Q6 34994471
    41 7nww:f (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    42 7nww:g (3.05) BS01 rna N/A GO:0003676 ... N/A 34994471
    43 7nww:h (3.05) BS01 rna N/A GO:0003723 ... N/A 34994471
    44 7nww:h (3.05) BS02 MG N/A GO:0003723 ... N/A 34994471
    45 7nww:i (3.05) BS01 rna N/A GO:0003723 ... N/A 34994471
    46 7nww:j (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    47 7nww:k (3.05) BS01 rna ? GO:0003723 ... P02359 34994471
    48 7nww:l (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    49 7nww:m (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    50 7nww:m (3.05) BS02 rna N/A GO:0003735 ... N/A 34994471
    51 7nww:n (3.05) BS01 rna N/A GO:0003723 ... N/A 34994471
    52 7nww:o (3.05) BS01 rna ? GO:0003735 ... A0A5I5F5V9 34994471
    53 7nww:p (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    54 7nww:q (3.05) BS01 rna N/A GO:0003676 ... N/A 34994471
    55 7nww:q (3.05) BS02 rna N/A GO:0003676 ... N/A 34994471
    56 7nww:q (3.05) BS03 MG N/A GO:0003676 ... N/A 34994471
    57 7nww:r (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    58 7nww:s (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    59 7nww:s (3.05) BS02 rna N/A GO:0003735 ... N/A 34994471
    60 7nww:t (3.05) BS01 rna ? GO:0000028 ... C3SYP2 34994471
    61 7nww:u (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    62 7nww:v (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    63 7nww:w (3.05) BS01 rna N/A GO:0003723 ... N/A 34994471
    64 7nww:x (3.05) BS01 rna N/A GO:0003723 ... N/A 34994471
    65 7nww:y (3.05) BS01 rna N/A GO:0003735 ... N/A 34994471
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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