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BioLiP
Download all results in tab-seperated text for 96 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7nwi:A (3.13) BS01 rna ? GO:0002181 ... G1TT27 34157102
    2 7nwi:AA (3.13) BS01 rna ? GO:0000028 ... G1TLT8 34157102
    3 7nwi:B (3.13) BS01 rna ? GO:0003723 ... G1TL06 34157102
    4 7nwi:BB (3.13) BS01 rna ? GO:0002181 ... P97351 34157102
    5 7nwi:C (3.13) BS01 rna N/A GO:0003735 ... N/A 34157102
    6 7nwi:C (3.13) BS02 rna N/A GO:0003735 ... N/A 34157102
    7 7nwi:CC (3.13) BS01 rna ? GO:0003723 ... O55214 34157102
    8 7nwi:D (3.13) BS01 rna ? GO:0000027 ... P19949 34157102
    9 7nwi:D (3.13) BS02 rna ? GO:0000027 ... P19949 34157102
    10 7nwi:DD (3.13) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 34157102
    11 7nwi:E (3.13) BS01 rna ? GO:0000027 ... G1SKF7 34157102
    12 7nwi:EE (3.13) BS01 rna N/A GO:0003723 ... N/A 34157102
    13 7nwi:F (3.13) BS01 rna ? GO:0000463 ... G1SV32 34157102
    14 7nwi:F (3.13) BS02 rna ? GO:0000463 ... G1SV32 34157102
    15 7nwi:FF (3.13) BS01 rna ? GO:0000028 ... G1TFM5 34157102
    16 7nwi:G (3.13) BS01 rna ? GO:0042254 ... G1STW0 34157102
    17 7nwi:G (3.13) BS02 rna ? GO:0042254 ... G1STW0 34157102
    18 7nwi:GG (3.13) BS01 rna ? GO:0003735 ... A0A6G1APX9 34157102
    19 7nwi:H (3.13) BS01 rna ? GO:0002181 ... G1SWI6 34157102
    20 7nwi:HH (3.13) BS01 rna ? GO:0003735 ... G1SVB0 34157102
    21 7nwi:I (3.13) BS01 rna ? GO:0000027 ... B7NZQ2 34157102
    22 7nwi:I (3.13) BS02 rna ? GO:0000027 ... B7NZQ2 34157102
    23 7nwi:II (3.13) BS01 rna ? GO:0000462 ... G1TJW1 34157102
    24 7nwi:J (3.13) BS01 rna N/A GO:0003735 ... N/A 34157102
    25 7nwi:J (3.13) BS02 rna N/A GO:0003735 ... N/A 34157102
    26 7nwi:J (3.13) BS03 rna N/A GO:0003735 ... N/A 34157102
    27 7nwi:JJ (3.13) BS01 rna ? GO:0003723 ... A0A1S3APZ1 34157102
    28 7nwi:KK (3.13) BS01 rna ? N/A G1T168 34157102
    29 7nwi:L (3.13) BS01 rna ? GO:0003723 ... G1TKB3 34157102
    30 7nwi:LL (3.13) BS01 rna ? GO:0003735 ... G1TRM4 34157102
    31 7nwi:M (3.13) BS01 rna ? GO:0003723 ... G1SZ12 34157102
    32 7nwi:MM (3.13) BS01 rna ? GO:0003735 ... G1SFR8 34157102
    33 7nwi:N (3.13) BS01 rna ? GO:0002181 ... G1T0C1 34157102
    34 7nwi:N (3.13) BS02 rna ? GO:0002181 ... G1T0C1 34157102
    35 7nwi:NN (3.13) BS01 rna ? GO:0003735 ... G1SP51 34157102
    36 7nwi:O (3.13) BS01 rna N/A GO:0003735 ... N/A 34157102
    37 7nwi:OO (3.13) BS01 rna N/A GO:0003735 ... N/A 34157102
    38 7nwi:P (3.13) BS01 rna N/A GO:0003735 ... N/A 34157102
    39 7nwi:PP (3.13) BS01 rna ? GO:0000028 ... G1U0Q2 34157102
    40 7nwi:Q (3.13) BS01 rna ? GO:0002181 ... F6QKI9 34157102
    41 7nwi:QQ (3.13) BS01 rna ? GO:0003735 ... Q5CZY9 34157102
    42 7nwi:R (3.13) BS01 rna ? GO:0003723 ... Q3T0W9 34157102
    43 7nwi:R (3.13) BS02 rna ? GO:0003723 ... Q3T0W9 34157102
    44 7nwi:RR (3.13) BS01 rna ? GO:0003735 ... G1TU13 34157102
    45 7nwi:S (3.13) BS01 rna N/A GO:0003735 ... N/A 34157102
    46 7nwi:S (3.13) BS02 rna N/A GO:0003735 ... N/A 34157102
    47 7nwi:SS (3.13) BS01 rna ? GO:0003676 ... G1TPG3 34157102
    48 7nwi:T (3.13) BS01 rna ? GO:0003735 ... G1SHQ2 34157102
    49 7nwi:TT (3.13) BS01 rna N/A GO:0003735 ... N/A 34157102
    50 7nwi:U (3.13) BS01 rna ? GO:0002181 ... Q4R5I3 34157102
    51 7nwi:UU (3.13) BS01 rna ? GO:0003723 ... A0A5F9CX53 34157102
    52 7nwi:V (3.13) BS01 rna ? GO:0000122 ... G1T6D1 34157102
    53 7nwi:W (3.13) BS01 rna ? GO:0002181 ... A0A061I3X8 34157102
    54 7nwi:WW (3.13) BS01 rna N/A GO:0003735 ... N/A 34157102
    55 7nwi:X (3.13) BS01 rna ? GO:0000027 ... G1SE76 34157102
    56 7nwi:X (3.13) BS02 rna ? GO:0000027 ... G1SE76 34157102
    57 7nwi:XX (3.13) BS01 rna ? GO:0003735 ... G1SZ47 34157102
    58 7nwi:Y (3.13) BS01 rna ? GO:0002181 ... G1SQH0 34157102
    59 7nwi:Y (3.13) BS02 rna ? GO:0002181 ... G1SQH0 34157102
    60 7nwi:YY (3.13) BS01 rna N/A GO:0003735 ... N/A 34157102
    61 7nwi:Z (3.13) BS01 rna ? GO:0003735 ... G1TXF6 34157102
    62 7nwi:ZZ (3.13) BS01 rna ? GO:0003735 ... G1TDB3 34157102
    63 7nwi:a (3.13) BS01 rna N/A GO:0003735 ... N/A 34157102
    64 7nwi:aa (3.13) BS01 rna ? GO:0003729 ... T0M5X4 34157102
    65 7nwi:b (3.13) BS01 rna N/A GO:0003735 ... N/A 34157102
    66 7nwi:bb (3.13) BS01 rna ? GO:0000028 ... G1TZ76 34157102
    67 7nwi:c (3.13) BS01 rna ? GO:0002181 ... G1TDL2 34157102
    68 7nwi:cc (3.13) BS01 rna ? GO:0000028 ... G1TIB4 34157102
    69 7nwi:d (3.13) BS01 rna ? GO:0003735 ... G1SHG0 34157102
    70 7nwi:dd (3.13) BS01 rna ? GO:0003735 ... G1U7M4 34157102
    71 7nwi:e (3.13) BS01 rna ? GO:0003735 ... G1TUN8 34157102
    72 7nwi:ee (3.13) BS01 rna ? GO:0003735 ... G1T8A2 34157102
    73 7nwi:f (3.13) BS01 rna ? GO:0000049 ... G1SF08 34157102
    74 7nwi:ff (3.13) BS01 rna N/A GO:0003735 ... N/A 34157102
    75 7nwi:g (3.13) BS01 rna ? GO:0003735 ... G1TXG5 34157102
    76 7nwi:g (3.13) BS02 ZN ? GO:0003735 ... G1TXG5 34157102
    77 7nwi:g (3.13) BS03 MG ? GO:0003735 ... G1TXG5 34157102
    78 7nwi:gg (3.13) BS01 rna ? GO:0001891 ... G1SJB4 34157102
    79 7nwi:h (3.13) BS01 rna ? GO:0000463 ... G1SIT5 34157102
    80 7nwi:h (3.13) BS02 rna ? GO:0000463 ... G1SIT5 34157102
    81 7nwi:i (3.13) BS01 rna N/A GO:0003735 ... N/A 34157102
    82 7nwi:j (3.13) BS01 rna ? GO:0003723 ... U3KPD5 34157102
    83 7nwi:j (3.13) BS02 rna ? GO:0003723 ... U3KPD5 34157102
    84 7nwi:j (3.13) BS03 ZN ? GO:0003723 ... U3KPD5 34157102
    85 7nwi:k (3.13) BS01 rna N/A GO:0003735 ... N/A 34157102
    86 7nwi:l (3.13) BS01 rna ? GO:0003735 ... G1SYU7 34157102
    87 7nwi:l (3.13) BS02 rna ? GO:0003735 ... G1SYU7 34157102
    88 7nwi:m (3.13) BS01 rna N/A GO:0003735 ... N/A 34157102
    89 7nwi:m (3.13) BS02 ZN N/A GO:0003735 ... N/A 34157102
    90 7nwi:o (3.13) BS01 rna ? GO:0003735 ... A0A6P5P305 34157102
    91 7nwi:o (3.13) BS02 ZN ? GO:0003735 ... A0A6P5P305 34157102
    92 7nwi:p (3.13) BS01 rna ? GO:0003735 ... G1SY53 34157102
    93 7nwi:p (3.13) BS02 ZN ? GO:0003735 ... G1SY53 34157102
    94 7nwi:r (3.13) BS01 rna ? GO:0003735 ... G1U7L1 34157102
    95 7nwi:s (3.13) BS01 rna ? GO:0000027 ... G1SPK4 34157102
    96 7nwi:t (3.13) BS01 rna ? GO:0003723 ... G1SMR7 34157102
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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