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BioLiP
Download all results in tab-seperated text for 103 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7nwh:A (4.1) BS01 rna ? GO:0002181 ... Q3T0S6 34157102
    2 7nwh:A (4.1) BS02 rna ? GO:0002181 ... Q3T0S6 34157102
    3 7nwh:AA (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    4 7nwh:B (4.1) BS01 rna ? GO:0003723 ... G1TL06 34157102
    5 7nwh:BB (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    6 7nwh:C (4.1) BS01 rna ? GO:0003723 ... G1SVW5 34157102
    7 7nwh:CC (4.1) BS01 rna N/A GO:0003723 ... N/A 34157102
    8 7nwh:D (4.1) BS01 rna ? GO:0000027 ... P19949 34157102
    9 7nwh:D (4.1) BS02 rna ? GO:0000027 ... P19949 34157102
    10 7nwh:DD (4.1) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 34157102
    11 7nwh:E (4.1) BS01 rna ? GO:0000027 ... G1SKF7 34157102
    12 7nwh:EE (4.1) BS01 rna N/A GO:0003723 ... N/A 34157102
    13 7nwh:F (4.1) BS01 rna ? GO:0000463 ... G1SV32 34157102
    14 7nwh:FF (4.1) BS01 rna ? GO:0000028 ... G1TFM5 34157102
    15 7nwh:G (4.1) BS01 rna N/A GO:0042254 ... N/A 34157102
    16 7nwh:G (4.1) BS02 rna N/A GO:0042254 ... N/A 34157102
    17 7nwh:GG (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    18 7nwh:H (4.1) BS01 rna ? GO:0002181 ... G1SWI6 34157102
    19 7nwh:HH (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    20 7nwh:I (4.1) BS01 rna ? GO:0000027 ... B7NZQ2 34157102
    21 7nwh:I (4.1) BS02 rna ? GO:0000027 ... B7NZQ2 34157102
    22 7nwh:II (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    23 7nwh:J (4.1) BS01 rna ? GO:0003723 ... G1TUB8 34157102
    24 7nwh:J (4.1) BS02 rna ? GO:0003723 ... G1TUB8 34157102
    25 7nwh:JJ (4.1) BS01 rna ? GO:0003723 ... A0A1S3APZ1 34157102
    26 7nwh:KK (4.1) BS01 rna ? N/A A0A2F0BDG8 34157102
    27 7nwh:L (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    28 7nwh:LL (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    29 7nwh:M (4.1) BS01 rna ? GO:0003723 ... G1SZ12 34157102
    30 7nwh:MM (4.1) BS01 rna ? GO:0003735 ... G1SFR8 34157102
    31 7nwh:N (4.1) BS01 rna ? GO:0002181 ... G1T0C1 34157102
    32 7nwh:N (4.1) BS02 rna ? GO:0002181 ... G1T0C1 34157102
    33 7nwh:NN (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    34 7nwh:NN (4.1) BS02 rna N/A GO:0003735 ... N/A 34157102
    35 7nwh:O (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    36 7nwh:OO (4.1) BS01 rna ? GO:0000028 ... G1T1F0 34157102
    37 7nwh:P (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    38 7nwh:P (4.1) BS02 rna N/A GO:0003735 ... N/A 34157102
    39 7nwh:PP (4.1) BS01 rna ? GO:0000028 ... G1U0Q2 34157102
    40 7nwh:Q (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    41 7nwh:QQ (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    42 7nwh:R (4.1) BS01 rna ? GO:0003723 ... Q3T0W9 34157102
    43 7nwh:R (4.1) BS02 rna ? GO:0003723 ... Q3T0W9 34157102
    44 7nwh:RR (4.1) BS01 rna ? GO:0003735 ... S7Q348 34157102
    45 7nwh:S (4.1) BS01 rna ? GO:0003735 ... A0A287APR1 34157102
    46 7nwh:S (4.1) BS02 rna ? GO:0003735 ... A0A287APR1 34157102
    47 7nwh:SS (4.1) BS01 rna ? GO:0003676 ... G1TPG3 34157102
    48 7nwh:T (4.1) BS01 rna ? GO:0003735 ... G1SHQ2 34157102
    49 7nwh:TT (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    50 7nwh:U (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    51 7nwh:UU (4.1) BS01 rna N/A GO:0003723 ... N/A 34157102
    52 7nwh:V (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    53 7nwh:W (4.1) BS01 rna ? GO:0002181 ... A0A061I3X8 34157102
    54 7nwh:W (4.1) BS02 rna ? GO:0002181 ... A0A061I3X8 34157102
    55 7nwh:WW (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    56 7nwh:X (4.1) BS01 rna ? GO:0000027 ... G1SE76 34157102
    57 7nwh:X (4.1) BS02 rna ? GO:0000027 ... G1SE76 34157102
    58 7nwh:XX (4.1) BS01 rna ? GO:0003735 ... G1SZ47 34157102
    59 7nwh:Y (4.1) BS01 rna ? GO:0002181 ... G1SQH0 34157102
    60 7nwh:Y (4.1) BS02 rna ? GO:0002181 ... G1SQH0 34157102
    61 7nwh:YY (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    62 7nwh:Z (4.1) BS01 rna ? GO:0003735 ... G1TXF6 34157102
    63 7nwh:ZZ (4.1) BS01 rna ? GO:0003735 ... G1TDB3 34157102
    64 7nwh:a (4.1) BS01 rna ? GO:0003735 ... G1SNY0 34157102
    65 7nwh:aa (4.1) BS01 rna ? GO:0003729 ... T0M5X4 34157102
    66 7nwh:aa (4.1) BS02 rna ? GO:0003729 ... T0M5X4 34157102
    67 7nwh:aa (4.1) BS03 ZN ? GO:0003729 ... T0M5X4 34157102
    68 7nwh:b (4.1) BS01 rna ? GO:0002181 ... G1SGR6 34157102
    69 7nwh:bb (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    70 7nwh:c (4.1) BS01 rna ? GO:0002181 ... G1TDL2 34157102
    71 7nwh:cc (4.1) BS01 rna ? GO:0000028 ... G1TIB4 34157102
    72 7nwh:d (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    73 7nwh:dd (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    74 7nwh:dd (4.1) BS02 ZN N/A GO:0003735 ... N/A 34157102
    75 7nwh:e (4.1) BS01 rna ? GO:0003735 ... G1TUN8 34157102
    76 7nwh:ee (4.1) BS01 rna ? GO:0003735 ... G1T8A2 34157102
    77 7nwh:f (4.1) BS01 rna ? GO:0000049 ... G1SF08 34157102
    78 7nwh:ff (4.1) BS01 rna ? GO:0003735 ... P62992 34157102
    79 7nwh:g (4.1) BS01 rna ? GO:0003735 ... G1TXG5 34157102
    80 7nwh:gg (4.1) BS01 rna ? GO:0005515 ... E9KL35 34157102
    81 7nwh:h (4.1) BS01 rna ? GO:0000463 ... G1SIT5 34157102
    82 7nwh:h (4.1) BS02 rna ? GO:0000463 ... G1SIT5 34157102
    83 7nwh:i (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    84 7nwh:ii (4.1) BS01 rna ? GO:0000184 ... P62497 34157102
    85 7nwh:ii (4.1) BS02 rna ? GO:0000184 ... P62497 34157102
    86 7nwh:ii (4.1) BS03 rna ? GO:0000184 ... P62497 34157102
    87 7nwh:j (4.1) BS01 rna ? GO:0003723 ... U3KPD5 34157102
    88 7nwh:j (4.1) BS02 rna ? GO:0003723 ... U3KPD5 34157102
    89 7nwh:j (4.1) BS03 ZN ? GO:0003723 ... U3KPD5 34157102
    90 7nwh:jj (4.1) BS01 rna N/A GO:0003924 ... N/A 34157102
    91 7nwh:jj (4.1) BS02 MG N/A GO:0003924 ... N/A 34157102
    92 7nwh:k (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    93 7nwh:l (4.1) BS01 rna ? GO:0003735 ... G1TTN1 34157102
    94 7nwh:l (4.1) BS02 rna ? GO:0003735 ... G1TTN1 34157102
    95 7nwh:m (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    96 7nwh:m (4.1) BS02 ZN N/A GO:0003735 ... N/A 34157102
    97 7nwh:o (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    98 7nwh:o (4.1) BS02 MG N/A GO:0003735 ... N/A 34157102
    99 7nwh:p (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    100 7nwh:p (4.1) BS02 ZN N/A GO:0003735 ... N/A 34157102
    101 7nwh:r (4.1) BS01 rna ? GO:0003735 ... G1U7L1 34157102
    102 7nwh:s (4.1) BS01 rna ? GO:0000027 ... G1SPK4 34157102
    103 7nwh:t (4.1) BS01 rna N/A GO:0003735 ... N/A 34157102
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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