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BioLiP
Download all results in tab-seperated text for 103 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7nqh:AB (3.5) BS01 rna ? GO:0003735 ... F1S001 33878294
    2 7nqh:AB (3.5) BS02 MG ? GO:0003735 ... F1S001 33878294
    3 7nqh:AC (3.5) BS01 rna ? GO:0005739 ... A0A287ANU4 33878294
    4 7nqh:AE (3.5) BS01 rna ? GO:0003723 ... F1SU66 33878294
    5 7nqh:AE (3.5) BS02 rna ? GO:0003723 ... F1SU66 33878294
    6 7nqh:AF (3.5) BS01 rna N/A GO:0003735 ... N/A 33878294
    7 7nqh:AG (3.5) BS01 rna ? GO:0000028 ... A0A286ZJ25 33878294
    8 7nqh:AI (3.5) BS01 rna ? GO:0003723 ... I3LU08 33878294
    9 7nqh:AI (3.5) BS02 rna ? GO:0003723 ... I3LU08 33878294
    10 7nqh:AJ (3.5) BS01 rna ? GO:0005739 ... F1RUU2 33878294
    11 7nqh:AK (3.5) BS01 rna ? GO:0003735 ... A0A286ZJJ6 33878294
    12 7nqh:AL (3.5) BS01 rna ? GO:0003735 ... A0A0M3KL52 33878294
    13 7nqh:AN (3.5) BS01 rna ? GO:0003735 ... A0A0M3KL53 33878294
    14 7nqh:AO (3.5) BS01 rna ? GO:0003735 ... A0A287BMP0 33878294
    15 7nqh:AP (3.5) BS01 rna ? GO:0003735 ... A0A480JTD7 33878294
    16 7nqh:AQ (3.5) BS01 rna ? GO:0003735 ... A0A8D1UDM1 33878294
    17 7nqh:AR (3.5) BS01 rna ? GO:0003735 ... A0A0M3KL54 33878294
    18 7nqh:AR (3.5) BS02 ZN ? GO:0003735 ... A0A0M3KL54 33878294
    19 7nqh:AU (3.5) BS01 rna ? GO:0003735 ... A0A286ZNB3 33878294
    20 7nqh:Ab (3.5) BS01 rna ? GO:0003735 ... A0A287AEW3 33878294
    21 7nqh:Ac (3.5) BS01 rna ? GO:0003735 ... A0A0M3KL55 33878294
    22 7nqh:Ac (3.5) BS02 ZN ? GO:0003735 ... A0A0M3KL55 33878294
    23 7nqh:Ad (3.5) BS01 rna ? GO:0005763 ... A0A287AY01 33878294
    24 7nqh:Ae (3.5) BS01 rna ? N/A A0A5G2R5D6 33878294
    25 7nqh:Ag (3.5) BS01 rna ? GO:0005654 ... A0A8D1XNL0 33878294
    26 7nqh:Ag (3.5) BS02 GTP ? GO:0005654 ... A0A8D1XNL0 33878294
    27 7nqh:Ai (3.5) BS01 rna ? N/A A0A4X1V2H3 33878294
    28 7nqh:Ai (3.5) BS02 peptide ? N/A A0A4X1V2H3 33878294
    29 7nqh:Aj (3.5) BS01 rna ? GO:0003735 ... A0A287AVS9 33878294
    30 7nqh:Am (3.5) BS01 rna ? GO:0005739 ... A0A4X1SZV4 33878294
    31 7nqh:An (3.5) BS01 rna ? GO:0005634 ... A0A8D2A802 33878294
    32 7nqh:An (3.5) BS02 rna ? GO:0005634 ... A0A8D2A802 33878294
    33 7nqh:Ap (3.5) BS01 rna ? GO:0003735 ... Q767K8 33878294
    34 7nqh:Ap (3.5) BS02 ZN ? GO:0003735 ... Q767K8 33878294
    35 7nqh:B0 (3.5) BS01 rna ? GO:0003735 ... A0A4X1U0F6 33878294
    36 7nqh:B1 (3.5) BS01 rna ? GO:0003735 ... A0A286ZTW8 33878294
    37 7nqh:B2 (3.5) BS01 rna ? GO:0003735 ... F1SGC7 33878294
    38 7nqh:B3 (3.5) BS01 rna ? GO:0003735 ... A0A8D1MIP3 33878294
    39 7nqh:B4 (3.5) BS01 rna ? GO:0003735 ... A0A4X1ULI6 33878294
    40 7nqh:B5 (3.5) BS01 rna ? GO:0003735 ... I3LTC4 33878294
    41 7nqh:B5 (3.5) BS02 ZN ? GO:0003735 ... I3LTC4 33878294
    42 7nqh:B6 (3.5) BS01 rna ? GO:0003735 ... A0A4X1TLP9 33878294
    43 7nqh:B7 (3.5) BS01 rna ? GO:0003735 ... A0A4X1UFR4 33878294
    44 7nqh:B8 (3.5) BS01 rna ? GO:0003735 ... F1SVC5 33878294
    45 7nqh:B9 (3.5) BS01 rna ? GO:0003735 ... A0A287A731 33878294
    46 7nqh:B9 (3.5) BS02 ZN ? GO:0003735 ... A0A287A731 33878294
    47 7nqh:BD (3.5) BS01 rna ? GO:0003735 ... F1RRN2 33878294
    48 7nqh:BD (3.5) BS02 MG ? GO:0003735 ... F1RRN2 33878294
    49 7nqh:BE (3.5) BS01 rna ? GO:0003735 ... A0A140UHW4 33878294
    50 7nqh:BF (3.5) BS01 rna ? GO:0003735 ... A0A287B9C4 33878294
    51 7nqh:BI (3.5) BS01 rna ? GO:0003735 ... I3LR45 33878294
    52 7nqh:BJ (3.5) BS01 peptide ? GO:0005840 ... F1RWJ0 33878294
    53 7nqh:BJ (3.5) BS02 peptide ? GO:0005840 ... F1RWJ0 33878294
    54 7nqh:BJ (3.5) BS03 peptide ? GO:0005840 ... F1RWJ0 33878294
    55 7nqh:BJ (3.5) BS04 peptide ? GO:0005840 ... F1RWJ0 33878294
    56 7nqh:BJ (3.5) BS05 rna ? GO:0005840 ... F1RWJ0 33878294
    57 7nqh:BK (3.5) BS01 rna ? GO:0003735 ... F1RU54 33878294
    58 7nqh:BL (3.5) BS01 rna ? GO:0003747 ... Q9UGC7 33878294
    59 7nqh:BL (3.5) BS02 rna ? GO:0003747 ... Q9UGC7 33878294
    60 7nqh:BL (3.5) BS03 rna ? GO:0003747 ... Q9UGC7 33878294
    61 7nqh:BL (3.5) BS04 rna ? GO:0003747 ... Q9UGC7 33878294
    62 7nqh:BN (3.5) BS01 rna ? GO:0003729 ... K7GP19 33878294
    63 7nqh:BO (3.5) BS01 rna ? GO:0003735 ... A0A287BMZ6 33878294
    64 7nqh:BP (3.5) BS01 rna N/A GO:0003735 ... N/A 33878294
    65 7nqh:BP (3.5) BS02 MG N/A GO:0003735 ... N/A 33878294
    66 7nqh:BQ (3.5) BS01 rna ? GO:0003735 ... F1RI89 33878294
    67 7nqh:BR (3.5) BS01 rna ? GO:0003735 ... F1RMQ4 33878294
    68 7nqh:BS (3.5) BS01 rna ? GO:0003735 ... A0A286ZNK1 33878294
    69 7nqh:BS (3.5) BS02 rna ? GO:0003735 ... A0A286ZNK1 33878294
    70 7nqh:BT (3.5) BS01 rna ? GO:0003735 ... I3LNJ0 33878294
    71 7nqh:BU (3.5) BS01 rna ? GO:0003735 ... A0A286ZU56 33878294
    72 7nqh:BV (3.5) BS01 rna ? GO:0003723 ... F1RY70 33878294
    73 7nqh:BW (3.5) BS01 rna ? GO:0003735 ... A0A4X1TXR4 33878294
    74 7nqh:BX (3.5) BS01 rna N/A GO:0003735 ... N/A 33878294
    75 7nqh:BY (3.5) BS01 rna ? GO:0003723 ... F1RHJ1 33878294
    76 7nqh:Ba (3.5) BS01 rna ? GO:0003735 ... A0A287BIV6 33878294
    77 7nqh:Bb (3.5) BS01 rna ? GO:0005739 ... F1RW03 33878294
    78 7nqh:Bb (3.5) BS02 rna ? GO:0005739 ... F1RW03 33878294
    79 7nqh:Bd (3.5) BS01 rna ? GO:0005739 ... A0A286ZP98 33878294
    80 7nqh:Bd (3.5) BS02 rna ? GO:0005739 ... A0A286ZP98 33878294
    81 7nqh:Be (3.5) BS01 rna ? GO:0003735 ... A0A8D1F1K9 33878294
    82 7nqh:Be (3.5) BS02 MG ? GO:0003735 ... A0A8D1F1K9 33878294
    83 7nqh:Bf (3.5) BS01 rna ? GO:0005739 ... A0A287BQA1 33878294
    84 7nqh:Bg (3.5) BS01 rna ? GO:0003735 ... F1S8U4 33878294
    85 7nqh:Bh (3.5) BS01 rna ? GO:0003723 ... F1SR64 33878294
    86 7nqh:Bi (3.5) BS01 rna ? GO:0005739 ... I3LGM5 33878294
    87 7nqh:Bj (3.5) BS01 rna ? GO:0003735 ... F1SRT0 33878294
    88 7nqh:Bk (3.5) BS01 rna ? GO:0005739 ... A0A480J9Z6 33878294
    89 7nqh:Bk (3.5) BS02 rna ? GO:0005739 ... A0A480J9Z6 33878294
    90 7nqh:Bk (3.5) BS03 rna ? GO:0005739 ... A0A480J9Z6 33878294
    91 7nqh:Bl (3.5) BS01 rna ? GO:0003735 ... A0A0R4J8D6 33878294
    92 7nqh:Bn (3.5) BS01 rna ? GO:0003735 ... A0A8D1P1C8 33878294
    93 7nqh:Bo (3.5) BS01 rna ? GO:0003735 ... F1S9B7 33878294
    94 7nqh:Bp (3.5) BS01 rna ? GO:0005739 ... A0A341D604 33878294
    95 7nqh:Bq (3.5) BS01 rna ? N/A I3LN63 33878294
    96 7nqh:Bt (3.5) BS01 rna ? GO:0003735 ... A0A287BP93 33878294
    97 7nqh:Bt (3.5) BS02 MG ? GO:0003735 ... A0A287BP93 33878294
    98 7nqh:Bv (3.5) BS01 rna ? GO:0005634 ... A0A286ZXA6 33878294
    99 7nqh:Bw (3.5) BS01 rna ? GO:0003735 ... A0A480QIM3 33878294
    100 7nqh:Bx (3.5) BS01 rna ? GO:0003735 ... F1RRH6 33878294
    101 7nqh:Bx (3.5) BS02 ZN ? GO:0003735 ... F1RRH6 33878294
    102 7nqh:CL (3.5) BS01 peptide ? GO:0003735 ... A0A4X1U6S6 33878294
    103 7nqh:CL (3.5) BS02 peptide ? GO:0003735 ... A0A4X1U6S6 33878294
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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