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BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7nhp:A (2.72) BS01 peptide 1.10.3.9 GO:0005506 ... P0A444 33846594
    2 7nhp:A (2.72) BS02 peptide 1.10.3.9 GO:0005506 ... P0A444 33846594
    3 7nhp:A (2.72) BS03 MN 1.10.3.9 GO:0005506 ... P0A444 33846594
    4 7nhp:A (2.72) BS04 PHO 1.10.3.9 GO:0005506 ... P0A444 33846594
    5 7nhp:A (2.72) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 33846594
    6 7nhp:A (2.72) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 33846594
    7 7nhp:A (2.72) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 33846594
    8 7nhp:A (2.72) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 33846594
    9 7nhp:A (2.72) BS09 FE 1.10.3.9 GO:0005506 ... P0A444 33846594
    10 7nhp:B (2.72) BS01 CLA ? GO:0009521 ... Q8DIQ1 33846594
    11 7nhp:B (2.72) BS02 CLA ? GO:0009521 ... Q8DIQ1 33846594
    12 7nhp:B (2.72) BS03 CLA ? GO:0009521 ... Q8DIQ1 33846594
    13 7nhp:B (2.72) BS04 CLA ? GO:0009521 ... Q8DIQ1 33846594
    14 7nhp:B (2.72) BS05 CLA ? GO:0009521 ... Q8DIQ1 33846594
    15 7nhp:B (2.72) BS06 CLA ? GO:0009521 ... Q8DIQ1 33846594
    16 7nhp:B (2.72) BS07 CLA ? GO:0009521 ... Q8DIQ1 33846594
    17 7nhp:B (2.72) BS08 CLA ? GO:0009521 ... Q8DIQ1 33846594
    18 7nhp:B (2.72) BS09 CLA ? GO:0009521 ... Q8DIQ1 33846594
    19 7nhp:B (2.72) BS10 CLA ? GO:0009521 ... Q8DIQ1 33846594
    20 7nhp:B (2.72) BS11 CLA ? GO:0009521 ... Q8DIQ1 33846594
    21 7nhp:B (2.72) BS12 CLA ? GO:0009521 ... Q8DIQ1 33846594
    22 7nhp:B (2.72) BS13 CLA ? GO:0009521 ... Q8DIQ1 33846594
    23 7nhp:B (2.72) BS14 CLA ? GO:0009521 ... Q8DIQ1 33846594
    24 7nhp:B (2.72) BS15 CLA ? GO:0009521 ... Q8DIQ1 33846594
    25 7nhp:B (2.72) BS16 CLA ? GO:0009521 ... Q8DIQ1 33846594
    26 7nhp:C (2.72) BS01 CLA ? GO:0005737 ... Q8DIF8 33846594
    27 7nhp:C (2.72) BS02 CLA ? GO:0005737 ... Q8DIF8 33846594
    28 7nhp:C (2.72) BS03 CLA ? GO:0005737 ... Q8DIF8 33846594
    29 7nhp:C (2.72) BS04 CLA ? GO:0005737 ... Q8DIF8 33846594
    30 7nhp:C (2.72) BS05 CLA ? GO:0005737 ... Q8DIF8 33846594
    31 7nhp:C (2.72) BS06 CLA ? GO:0005737 ... Q8DIF8 33846594
    32 7nhp:C (2.72) BS07 CLA ? GO:0005737 ... Q8DIF8 33846594
    33 7nhp:C (2.72) BS08 CLA ? GO:0005737 ... Q8DIF8 33846594
    34 7nhp:C (2.72) BS09 CLA ? GO:0005737 ... Q8DIF8 33846594
    35 7nhp:C (2.72) BS10 CLA ? GO:0005737 ... Q8DIF8 33846594
    36 7nhp:C (2.72) BS11 CLA ? GO:0005737 ... Q8DIF8 33846594
    37 7nhp:C (2.72) BS12 CLA ? GO:0005737 ... Q8DIF8 33846594
    38 7nhp:C (2.72) BS13 CLA ? GO:0005737 ... Q8DIF8 33846594
    39 7nhp:D (2.72) BS01 PHO 1.10.3.9 GO:0005506 ... Q8CM25 33846594
    40 7nhp:D (2.72) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 33846594
    41 7nhp:D (2.72) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 33846594
    42 7nhp:D (2.72) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 33846594
    43 7nhp:D (2.72) BS05 FE 1.10.3.9 GO:0005506 ... Q8CM25 33846594
    44 7nhp:D (2.72) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 33846594
    45 7nhp:D (2.72) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 33846594
    46 7nhp:D (2.72) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 33846594
    47 7nhp:E (2.72) BS01 HEM ? GO:0005506 ... Q8DIP0 33846594
    48 7nhp:F (2.72) BS01 HEM ? GO:0005506 ... Q8DIN9 33846594
    49 7nhp:H (2.72) BS01 CLA ? GO:0009523 ... Q8DJ43 33846594
    50 7nhp:H (2.72) BS02 CLA ? GO:0009523 ... Q8DJ43 33846594
    51 7nhp:K (2.72) BS01 peptide ? GO:0005737 ... Q9F1K9 33846594
    52 7nhp:K (2.72) BS02 CLA ? GO:0005737 ... Q9F1K9 33846594
    53 7nhp:K (2.72) BS03 CLA ? GO:0005737 ... Q9F1K9 33846594
    54 7nhp:L (2.72) BS01 peptide ? GO:0005737 ... Q8DIN8 33846594
    55 7nhp:Z (2.72) BS01 peptide ? GO:0009523 ... Q8DHJ2 33846594
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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