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BioLiP
Download all results in tab-seperated text for 67 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7msm:0 (2.79) BS01 rna ? GO:0003735 ... P9WH99 35064151
    2 7msm:1 (2.79) BS01 rna ? GO:0003735 ... P9WH95 35064151
    3 7msm:2 (2.79) BS01 rna ? GO:0003735 ... P9WH93 35064151
    4 7msm:3 (2.79) BS01 rna ? GO:0003735 ... P9WH91 35064151
    5 7msm:4 (2.79) BS01 rna ? GO:0003735 ... P9WH89 35064151
    6 7msm:4 (2.79) BS02 ZN ? GO:0003735 ... P9WH89 35064151
    7 7msm:6 (2.79) BS01 rna ? GO:0003735 ... P9WHA1 35064151
    8 7msm:6 (2.79) BS02 ZN ? GO:0003735 ... P9WHA1 35064151
    9 7msm:8 (2.79) BS01 rna ? GO:0000049 ... P9WHC7 35064151
    10 7msm:C (2.79) BS01 rna ? GO:0002181 ... P9WHA5 35064151
    11 7msm:D (2.79) BS01 rna ? GO:0003735 ... P9WH87 35064151
    12 7msm:E (2.79) BS01 rna ? GO:0003735 ... P9WH85 35064151
    13 7msm:F (2.79) BS01 rna ? GO:0000049 ... P9WH83 35064151
    14 7msm:F (2.79) BS02 rna ? GO:0000049 ... P9WH83 35064151
    15 7msm:G (2.79) BS01 rna ? GO:0002181 ... P9WH81 35064151
    16 7msm:H (2.79) BS01 rna ? GO:0003735 ... P9WH79 35064151
    17 7msm:J (2.79) BS01 rna ? GO:0003729 ... A0A0T9D5H2 35064151
    18 7msm:K (2.79) BS01 rna ? GO:0003735 ... P9WHD9 35064151
    19 7msm:L (2.79) BS01 rna ? GO:0003735 ... P9WHD7 35064151
    20 7msm:M (2.79) BS01 rna ? GO:0000049 ... P9WHD5 35064151
    21 7msm:N (2.79) BS01 rna ? GO:0003735 ... P9WHD3 35064151
    22 7msm:O (2.79) BS01 rna ? GO:0003735 ... P9WHD1 35064151
    23 7msm:O (2.79) BS02 rna ? GO:0003735 ... P9WHD1 35064151
    24 7msm:P (2.79) BS01 rna ? GO:0003735 ... P9WHC9 35064151
    25 7msm:P (2.79) BS02 rna ? GO:0003735 ... P9WHC9 35064151
    26 7msm:Q (2.79) BS01 rna ? GO:0000027 ... P9WHC5 35064151
    27 7msm:R (2.79) BS01 rna ? GO:0003723 ... P9WHC3 35064151
    28 7msm:S (2.79) BS01 rna ? GO:0003735 ... P9WHC1 35064151
    29 7msm:T (2.79) BS01 rna ? GO:0000027 ... P9WHB9 35064151
    30 7msm:U (2.79) BS01 rna ? GO:0003723 ... P9WHB7 35064151
    31 7msm:V (2.79) BS01 rna ? GO:0003723 ... P9WHB5 35064151
    32 7msm:V (2.79) BS02 rna ? GO:0003723 ... P9WHB5 35064151
    33 7msm:W (2.79) BS01 rna ? GO:0003735 ... P9WHB3 35064151
    34 7msm:W (2.79) BS02 rna ? GO:0003735 ... P9WHB3 35064151
    35 7msm:X (2.79) BS01 rna ? GO:0003735 ... P0DV54 35064151
    36 7msm:X (2.79) BS02 ZN ? GO:0003735 ... P0DV54 35064151
    37 7msm:Y (2.79) BS01 rna ? GO:0003735 ... P9WHA7 35064151
    38 7msm:Z (2.79) BS01 rna ? GO:0003735 ... P9WHA3 35064151
    39 7msm:c (2.79) BS01 rna ? GO:0003676 ... P9WH37 35064151
    40 7msm:d (2.79) BS01 rna ? GO:0003723 ... P9WH35 35064151
    41 7msm:e (2.79) BS01 rna ? GO:0003723 ... P9WH33 35064151
    42 7msm:f (2.79) BS01 rna ? GO:0003735 ... P9WH31 35064151
    43 7msm:g (2.79) BS01 rna ? GO:0000028 ... P9WH29 35064151
    44 7msm:h (2.79) BS01 rna ? GO:0003735 ... P9WH27 35064151
    45 7msm:i (2.79) BS01 rna ? GO:0003723 ... P9WH25 35064151
    46 7msm:i (2.79) BS02 rna ? GO:0003723 ... P9WH25 35064151
    47 7msm:j (2.79) BS01 rna ? GO:0000049 ... P9WH67 35064151
    48 7msm:k (2.79) BS01 rna ? GO:0003735 ... P9WH65 35064151
    49 7msm:l (2.79) BS01 rna ? GO:0000049 ... P9WH63 35064151
    50 7msm:m (2.79) BS01 rna ? GO:0000049 ... P9WH61 35064151
    51 7msm:n (2.79) BS01 rna ? GO:0003735 ... P9WH57 35064151
    52 7msm:n (2.79) BS02 ZN ? GO:0003735 ... P9WH57 35064151
    53 7msm:o (2.79) BS01 rna ? GO:0003735 ... P9WH55 35064151
    54 7msm:o (2.79) BS02 rna ? GO:0003735 ... P9WH55 35064151
    55 7msm:p (2.79) BS01 rna ? GO:0003735 ... P9WH53 35064151
    56 7msm:q (2.79) BS01 rna ? GO:0003735 ... P9WH51 35064151
    57 7msm:r (2.79) BS01 rna ? GO:0003735 ... P9WH49 35064151
    58 7msm:r (2.79) BS02 ZN ? GO:0003735 ... P9WH49 35064151
    59 7msm:s (2.79) BS01 rna ? GO:0000028 ... P9WH45 35064151
    60 7msm:t (2.79) BS01 rna ? GO:0003723 ... P9WH41 35064151
    61 7msm:x (2.79) BS01 rna 3.6.1.- GO:0000049 ... P9WQK3 35064151
    62 7msm:x (2.79) BS02 rna 3.6.1.- GO:0000049 ... P9WQK3 35064151
    63 7msm:x (2.79) BS03 rna 3.6.1.- GO:0000049 ... P9WQK3 35064151
    64 7msm:x (2.79) BS04 ADP 3.6.1.- GO:0000049 ... P9WQK3 35064151
    65 7msm:x (2.79) BS05 ADP 3.6.1.- GO:0000049 ... P9WQK3 35064151
    66 7msm:x (2.79) BS06 MG 3.6.1.- GO:0000049 ... P9WQK3 35064151
    67 7msm:x (2.79) BS07 MG 3.6.1.- GO:0000049 ... P9WQK3 35064151
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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