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BioLiP
Download all results in tab-seperated text for 76 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7mqa:L3 (2.7) BS01 rna N/A GO:0003676 ... N/A 34516797
    2 7mqa:L4 (2.7) BS01 rna ? GO:0002181 ... P62701 34516797
    3 7mqa:L5 (2.7) BS01 rna ? GO:0000028 ... P46782 34516797
    4 7mqa:L6 (2.7) BS01 rna ? GO:0000082 ... P62753 34516797
    5 7mqa:L7 (2.7) BS01 rna ? GO:0001843 ... P62081 34516797
    6 7mqa:L8 (2.7) BS01 rna ? GO:0000462 ... P62241 34516797
    7 7mqa:L9 (2.7) BS01 rna ? GO:0002181 ... P46781 34516797
    8 7mqa:LA (2.7) BS01 rna ? GO:0002181 ... P25398 34516797
    9 7mqa:LC (2.7) BS01 rna ? GO:0000462 ... P62249 34516797
    10 7mqa:LD (2.7) BS01 rna ? GO:0002181 ... P62280 34516797
    11 7mqa:LF (2.7) BS01 rna ? GO:0002181 ... P62847 34516797
    12 7mqa:LG (2.7) BS01 rna ? GO:0000028 ... P62857 34516797
    13 7mqa:LH (2.7) BS01 rna ? GO:0003723 ... Q8IWA0 34516797
    14 7mqa:LJ (2.7) BS01 rna ? GO:0001650 ... Q8TED0 34516797
    15 7mqa:LJ (2.7) BS02 rna ? GO:0001650 ... Q8TED0 34516797
    16 7mqa:LM (2.7) BS01 rna ? GO:0000462 ... Q9H583 34516797
    17 7mqa:LN (2.7) BS01 rna ? GO:0000462 ... Q969X6 34516797
    18 7mqa:LO (2.7) BS01 rna ? GO:0000028 ... Q15269 34516797
    19 7mqa:LP (2.7) BS01 rna ? GO:0000462 ... Q9NYH9 34516797
    20 7mqa:LQ (2.7) BS01 rna ? GO:0003723 ... Q9UNX4 34516797
    21 7mqa:LR (2.7) BS01 rna ? GO:0000472 ... Q12788 34516797
    22 7mqa:LS (2.7) BS01 rna ? GO:0003723 ... Q9Y5J1 34516797
    23 7mqa:LS (2.7) BS02 rna ? GO:0003723 ... Q9Y5J1 34516797
    24 7mqa:LU (2.7) BS01 rna ? GO:0000462 ... Q9NV06 34516797
    25 7mqa:LU (2.7) BS02 rna ? GO:0000462 ... Q9NV06 34516797
    26 7mqa:LW (2.7) BS01 rna ? GO:0000462 ... O15213 34516797
    27 7mqa:LY (2.7) BS01 rna ? GO:0003723 ... Q86WX3 34516797
    28 7mqa:LZ (2.7) BS01 rna ? GO:0003723 ... Q9NV31 34516797
    29 7mqa:NA (2.7) BS01 rna ? GO:0000375 ... O00566 34516797
    30 7mqa:NB (2.7) BS01 rna ? GO:0000462 ... Q9NQZ2 34516797
    31 7mqa:NB (2.7) BS02 rna ? GO:0000462 ... Q9NQZ2 34516797
    32 7mqa:NF (2.7) BS01 rna ? GO:0002181 ... P62277 34516797
    33 7mqa:NG (2.7) BS01 rna ? GO:0000028 ... P62263 34516797
    34 7mqa:NH (2.7) BS01 rna ? GO:0000794 ... Q9H6R4 34516797
    35 7mqa:NH (2.7) BS02 ATP ? GO:0000794 ... Q9H6R4 34516797
    36 7mqa:NI (2.7) BS01 rna ? GO:0000028 ... Q9Y3A4 34516797
    37 7mqa:NL (2.7) BS01 rna 2.1.1.183 GO:0000154 ... Q9UNQ2 34516797
    38 7mqa:NL (2.7) BS02 rna 2.1.1.183 GO:0000154 ... Q9UNQ2 34516797
    39 7mqa:NM (2.7) BS01 rna ? GO:0002181 ... P61247 34516797
    40 7mqa:NO (2.7) BS01 rna ? GO:0002181 ... P62244 34516797
    41 7mqa:NP (2.7) BS01 rna ? GO:0000028 ... P39019 34516797
    42 7mqa:NQ (2.7) BS01 rna ? GO:0000028 ... P42677 34516797
    43 7mqa:NQ (2.7) BS02 ZN ? GO:0000028 ... P42677 34516797
    44 7mqa:NR (2.7) BS01 rna N/A N/A N/A 34516797
    45 7mqa:NS (2.7) BS01 rna 3.6.4.13 GO:0000462 ... Q8IY37 34516797
    46 7mqa:NT (2.7) BS01 rna ? GO:0002181 ... P62979 34516797
    47 7mqa:NT (2.7) BS02 ZN ? GO:0002181 ... P62979 34516797
    48 7mqa:NU (2.7) BS01 rna ? GO:0002181 ... P08708 34516797
    49 7mqa:SA (2.7) BS01 rna ? GO:0001650 ... O00567 34516797
    50 7mqa:SB (2.7) BS01 rna ? GO:0001094 ... Q9Y2X3 34516797
    51 7mqa:SC (2.7) BS01 rna 2.1.1.- GO:0000494 ... P22087 34516797
    52 7mqa:SE (2.7) BS01 rna ? GO:0000398 ... P55769 34516797
    53 7mqa:SF (2.7) BS01 rna ? GO:0000398 ... P55769 34516797
    54 7mqa:SG (2.7) BS01 rna ? GO:0003723 ... O43818 34516797
    55 7mqa:SH (2.7) BS01 rna ? GO:0000447 ... Q9Y2P8 34516797
    56 7mqa:SI (2.7) BS01 rna ? GO:0000462 ... Q14692 34516797
    57 7mqa:SI (2.7) BS02 rna ? GO:0000462 ... Q14692 34516797
    58 7mqa:SI (2.7) BS03 GTP ? GO:0000462 ... Q14692 34516797
    59 7mqa:SI (2.7) BS04 MG ? GO:0000462 ... Q14692 34516797
    60 7mqa:SJ (2.7) BS01 SAH 2.1.1.- GO:0001824 ... Q92979 34516797
    61 7mqa:SK (2.7) BS01 rna 2.1.1.- GO:0001824 ... Q92979 34516797
    62 7mqa:SK (2.7) BS02 SAH 2.1.1.- GO:0001824 ... Q92979 34516797
    63 7mqa:SL (2.7) BS01 rna ? GO:0003723 ... Q9Y324 34516797
    64 7mqa:SL (2.7) BS02 ZN ? GO:0003723 ... Q9Y324 34516797
    65 7mqa:SM (2.7) BS01 rna ? GO:0001650 ... Q96G21 34516797
    66 7mqa:SP (2.7) BS01 rna ? GO:0000447 ... O75691 34516797
    67 7mqa:SQ (2.7) BS01 rna ? GO:0003723 ... Q5QJE6 34516797
    68 7mqa:SQ (2.7) BS02 rna ? GO:0003723 ... Q5QJE6 34516797
    69 7mqa:SR (2.7) BS01 rna ? GO:0002181 ... P62266 34516797
    70 7mqa:SR (2.7) BS02 rna ? GO:0002181 ... P62266 34516797
    71 7mqa:SS (2.7) BS01 rna ? GO:0003723 ... Q9BVJ6 34516797
    72 7mqa:ST (2.7) BS01 rna N/A GO:0032040 ... N/A 34516797
    73 7mqa:SW (2.7) BS01 rna ? GO:0003676 ... Q9NRX1 34516797
    74 7mqa:SY (2.7) BS01 rna ? GO:0003723 ... Q9Y3A2 34516797
    75 7mqa:SY (2.7) BS02 rna ? GO:0003723 ... Q9Y3A2 34516797
    76 7mqa:SZ (2.7) BS01 rna N/A N/A N/A 34516797
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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