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BioLiP
Download all results in tab-seperated text for 92 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7mq8:L4 (3.6) BS01 rna ? GO:0002181 ... P62701 34516797
    2 7mq8:L5 (3.6) BS01 rna ? GO:0000028 ... P46782 34516797
    3 7mq8:L6 (3.6) BS01 rna ? GO:0000082 ... P62753 34516797
    4 7mq8:L8 (3.6) BS01 rna ? GO:0000462 ... P62241 34516797
    5 7mq8:L9 (3.6) BS01 rna ? GO:0002181 ... P46781 34516797
    6 7mq8:LA (3.6) BS01 rna ? GO:0002181 ... P25398 34516797
    7 7mq8:LC (3.6) BS01 rna ? GO:0000462 ... P62249 34516797
    8 7mq8:LC (3.6) BS02 rna ? GO:0000462 ... P62249 34516797
    9 7mq8:LD (3.6) BS01 rna ? GO:0002181 ... P62280 34516797
    10 7mq8:LF (3.6) BS01 rna ? GO:0002181 ... P62847 34516797
    11 7mq8:LG (3.6) BS01 rna ? GO:0000028 ... P62857 34516797
    12 7mq8:LH (3.6) BS01 rna ? GO:0003723 ... Q8IWA0 34516797
    13 7mq8:LJ (3.6) BS01 rna ? GO:0001650 ... Q8TED0 34516797
    14 7mq8:LJ (3.6) BS02 rna ? GO:0001650 ... Q8TED0 34516797
    15 7mq8:LL (3.6) BS01 rna ? GO:0000462 ... Q15061 34516797
    16 7mq8:LN (3.6) BS01 rna ? GO:0000462 ... Q969X6 34516797
    17 7mq8:LO (3.6) BS01 rna ? GO:0000028 ... Q15269 34516797
    18 7mq8:LO (3.6) BS02 rna ? GO:0000028 ... Q15269 34516797
    19 7mq8:LO (3.6) BS03 rna ? GO:0000028 ... Q15269 34516797
    20 7mq8:LP (3.6) BS01 rna ? GO:0000462 ... Q9NYH9 34516797
    21 7mq8:LP (3.6) BS02 rna ? GO:0000462 ... Q9NYH9 34516797
    22 7mq8:LQ (3.6) BS01 rna ? GO:0003723 ... Q9UNX4 34516797
    23 7mq8:LR (3.6) BS01 rna ? GO:0000472 ... Q12788 34516797
    24 7mq8:LS (3.6) BS01 rna ? GO:0003723 ... Q9Y5J1 34516797
    25 7mq8:LS (3.6) BS02 rna ? GO:0003723 ... Q9Y5J1 34516797
    26 7mq8:LT (3.6) BS01 rna ? GO:0003723 ... Q8NI36 34516797
    27 7mq8:LT (3.6) BS02 rna ? GO:0003723 ... Q8NI36 34516797
    28 7mq8:LU (3.6) BS01 rna ? GO:0000462 ... Q9NV06 34516797
    29 7mq8:LU (3.6) BS02 rna ? GO:0000462 ... Q9NV06 34516797
    30 7mq8:LW (3.6) BS01 rna ? GO:0000462 ... O15213 34516797
    31 7mq8:LW (3.6) BS02 rna ? GO:0000462 ... O15213 34516797
    32 7mq8:LZ (3.6) BS01 rna ? GO:0003723 ... Q9NV31 34516797
    33 7mq8:LZ (3.6) BS02 rna ? GO:0003723 ... Q9NV31 34516797
    34 7mq8:NA (3.6) BS01 rna ? GO:0000375 ... O00566 34516797
    35 7mq8:NB (3.6) BS01 rna ? GO:0000462 ... Q9NQZ2 34516797
    36 7mq8:NC (3.6) BS01 rna ? GO:0000462 ... Q8NEJ9 34516797
    37 7mq8:ND (3.6) BS01 rna ? GO:0003723 ... Q9UMY1 34516797
    38 7mq8:NE (3.6) BS01 rna ? GO:0003723 ... Q8NDD1 34516797
    39 7mq8:NE (3.6) BS02 rna ? GO:0003723 ... Q8NDD1 34516797
    40 7mq8:NF (3.6) BS01 rna ? GO:0002181 ... P62277 34516797
    41 7mq8:NG (3.6) BS01 rna ? GO:0000028 ... P62263 34516797
    42 7mq8:NH (3.6) BS01 rna ? GO:0000794 ... Q9H6R4 34516797
    43 7mq8:NH (3.6) BS02 ATP ? GO:0000794 ... Q9H6R4 34516797
    44 7mq8:NH (3.6) BS03 MG ? GO:0000794 ... Q9H6R4 34516797
    45 7mq8:NI (3.6) BS01 rna ? GO:0000028 ... Q9Y3A4 34516797
    46 7mq8:NJ (3.6) BS01 rna 2.3.1.- GO:0000049 ... Q9H0A0 34516797
    47 7mq8:NK (3.6) BS01 ATP 2.3.1.- GO:0000049 ... Q9H0A0 34516797
    48 7mq8:NM (3.6) BS01 rna ? GO:0002181 ... P61247 34516797
    49 7mq8:NN (3.6) BS01 rna ? GO:0003723 ... Q9NY61 34516797
    50 7mq8:NO (3.6) BS01 rna ? GO:0002181 ... P62244 34516797
    51 7mq8:NQ (3.6) BS01 rna ? GO:0000028 ... P42677 34516797
    52 7mq8:NQ (3.6) BS02 ZN ? GO:0000028 ... P42677 34516797
    53 7mq8:NR (3.6) BS01 rna N/A N/A N/A 34516797
    54 7mq8:NT (3.6) BS01 rna N/A GO:0003735 ... N/A 34516797
    55 7mq8:NT (3.6) BS02 ZN N/A GO:0003735 ... N/A 34516797
    56 7mq8:NU (3.6) BS01 rna ? GO:0002181 ... P08708 34516797
    57 7mq8:NW (3.6) BS01 rna ? GO:0000462 ... Q9BSC4 34516797
    58 7mq8:NY (3.6) BS01 rna ? GO:0003676 ... Q13601 34516797
    59 7mq8:SA (3.6) BS01 rna ? GO:0001650 ... O00567 34516797
    60 7mq8:SA (3.6) BS02 rna ? GO:0001650 ... O00567 34516797
    61 7mq8:SB (3.6) BS01 rna ? GO:0001094 ... Q9Y2X3 34516797
    62 7mq8:SB (3.6) BS02 rna ? GO:0001094 ... Q9Y2X3 34516797
    63 7mq8:SE (3.6) BS01 rna ? GO:0000398 ... P55769 34516797
    64 7mq8:SE (3.6) BS02 rna ? GO:0000398 ... P55769 34516797
    65 7mq8:SF (3.6) BS01 rna ? GO:0000398 ... P55769 34516797
    66 7mq8:SG (3.6) BS01 rna ? GO:0003723 ... O43818 34516797
    67 7mq8:SH (3.6) BS01 rna ? GO:0000447 ... Q9Y2P8 34516797
    68 7mq8:SI (3.6) BS01 rna N/A GO:0005525 ... N/A 34516797
    69 7mq8:SI (3.6) BS02 rna N/A GO:0005525 ... N/A 34516797
    70 7mq8:SI (3.6) BS03 rna N/A GO:0005525 ... N/A 34516797
    71 7mq8:SI (3.6) BS04 GTP N/A GO:0005525 ... N/A 34516797
    72 7mq8:SI (3.6) BS05 MG N/A GO:0005525 ... N/A 34516797
    73 7mq8:SJ (3.6) BS01 SAH 2.1.1.- GO:0001824 ... Q92979 34516797
    74 7mq8:SK (3.6) BS01 rna 2.1.1.- GO:0001824 ... Q92979 34516797
    75 7mq8:SK (3.6) BS02 SAH 2.1.1.- GO:0001824 ... Q92979 34516797
    76 7mq8:SL (3.6) BS01 rna ? GO:0003723 ... Q9Y324 34516797
    77 7mq8:SL (3.6) BS02 rna ? GO:0003723 ... Q9Y324 34516797
    78 7mq8:SL (3.6) BS03 rna ? GO:0003723 ... Q9Y324 34516797
    79 7mq8:SL (3.6) BS04 ZN ? GO:0003723 ... Q9Y324 34516797
    80 7mq8:SM (3.6) BS01 rna ? GO:0001650 ... Q96G21 34516797
    81 7mq8:SM (3.6) BS02 rna ? GO:0001650 ... Q96G21 34516797
    82 7mq8:SP (3.6) BS01 rna ? GO:0000447 ... O75691 34516797
    83 7mq8:SQ (3.6) BS01 rna ? GO:0003723 ... Q5QJE6 34516797
    84 7mq8:SQ (3.6) BS02 rna ? GO:0003723 ... Q5QJE6 34516797
    85 7mq8:SQ (3.6) BS03 rna ? GO:0003723 ... Q5QJE6 34516797
    86 7mq8:SR (3.6) BS01 rna ? GO:0002181 ... P62266 34516797
    87 7mq8:ST (3.6) BS01 rna N/A GO:0032040 ... N/A 34516797
    88 7mq8:SW (3.6) BS01 rna ? GO:0003676 ... Q9NRX1 34516797
    89 7mq8:SY (3.6) BS01 rna ? GO:0003723 ... Q9Y3A2 34516797
    90 7mq8:SY (3.6) BS02 rna ? GO:0003723 ... Q9Y3A2 34516797
    91 7mq8:SY (3.6) BS03 rna ? GO:0003723 ... Q9Y3A2 34516797
    92 7mq8:SZ (3.6) BS01 rna N/A N/A N/A 34516797
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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