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BioLiP
Download all results in tab-seperated text for 131 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7miz:A0 (3.4) BS01 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    2 7miz:A0 (3.4) BS02 MG 3.6.5.- GO:0000226 ... P10873 34031406
    3 7miz:A1 (3.4) BS01 GDP ? GO:0000226 ... I7BFC9 34031406
    4 7miz:A2 (3.4) BS01 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    5 7miz:A2 (3.4) BS02 MG 3.6.5.- GO:0000226 ... P10873 34031406
    6 7miz:A3 (3.4) BS01 GDP ? GO:0000226 ... I7BFC9 34031406
    7 7miz:A4 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    8 7miz:A4 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    9 7miz:A5 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    10 7miz:A5 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    11 7miz:A6 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    12 7miz:A6 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    13 7miz:A6 (3.4) BS03 MG 3.6.5.- GO:0000226 ... P10873 34031406
    14 7miz:A7 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    15 7miz:A7 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    16 7miz:A8 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    17 7miz:A8 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    18 7miz:A9 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    19 7miz:A9 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    20 7miz:B0 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    21 7miz:B0 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    22 7miz:B1 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    23 7miz:B1 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    24 7miz:B2 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    25 7miz:B2 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    26 7miz:B3 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    27 7miz:B3 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    28 7miz:B4 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    29 7miz:B4 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    30 7miz:B5 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    31 7miz:B5 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    32 7miz:B6 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    33 7miz:B6 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    34 7miz:B7 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    35 7miz:B7 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    36 7miz:B8 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    37 7miz:B8 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    38 7miz:B8 (3.4) BS03 MG 3.6.5.- GO:0000226 ... P10873 34031406
    39 7miz:B9 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    40 7miz:B9 (3.4) BS02 GTP ? GO:0000226 ... I7BFC9 34031406
    41 7miz:B9 (3.4) BS03 GDP ? GO:0000226 ... I7BFC9 34031406
    42 7miz:C0 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    43 7miz:C0 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    44 7miz:C0 (3.4) BS03 MG 3.6.5.- GO:0000226 ... P10873 34031406
    45 7miz:C1 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    46 7miz:C1 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    47 7miz:C2 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    48 7miz:C2 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    49 7miz:C2 (3.4) BS03 MG 3.6.5.- GO:0000226 ... P10873 34031406
    50 7miz:C3 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    51 7miz:C3 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    52 7miz:C4 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    53 7miz:C4 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    54 7miz:C4 (3.4) BS03 MG 3.6.5.- GO:0000226 ... P10873 34031406
    55 7miz:C5 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    56 7miz:C5 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    57 7miz:C6 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    58 7miz:C6 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    59 7miz:C6 (3.4) BS03 MG 3.6.5.- GO:0000226 ... P10873 34031406
    60 7miz:C7 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    61 7miz:C7 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    62 7miz:C8 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    63 7miz:C8 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    64 7miz:C9 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    65 7miz:C9 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    66 7miz:D0 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    67 7miz:D0 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    68 7miz:D1 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    69 7miz:D1 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    70 7miz:D2 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    71 7miz:D2 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    72 7miz:D3 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    73 7miz:D3 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    74 7miz:D4 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    75 7miz:D4 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    76 7miz:D4 (3.4) BS03 MG 3.6.5.- GO:0000226 ... P10873 34031406
    77 7miz:D5 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    78 7miz:D5 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    79 7miz:D6 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    80 7miz:D6 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    81 7miz:D7 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    82 7miz:D7 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    83 7miz:D8 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    84 7miz:D8 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    85 7miz:D9 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    86 7miz:D9 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    87 7miz:E0 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    88 7miz:E0 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    89 7miz:E1 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    90 7miz:E1 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    91 7miz:E2 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    92 7miz:E2 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    93 7miz:E2 (3.4) BS03 MG 3.6.5.- GO:0000226 ... P10873 34031406
    94 7miz:E3 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    95 7miz:E3 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    96 7miz:E4 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    97 7miz:E4 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    98 7miz:E5 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    99 7miz:E5 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    100 7miz:E6 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    101 7miz:E6 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    102 7miz:E7 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    103 7miz:E7 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    104 7miz:E8 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    105 7miz:E8 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    106 7miz:E8 (3.4) BS03 MG 3.6.5.- GO:0000226 ... P10873 34031406
    107 7miz:E9 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    108 7miz:E9 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    109 7miz:F0 (3.4) BS01 peptide 3.6.5.- GO:0000226 ... P10873 34031406
    110 7miz:F0 (3.4) BS02 GTP 3.6.5.- GO:0000226 ... P10873 34031406
    111 7miz:F1 (3.4) BS01 peptide ? GO:0000226 ... I7BFC9 34031406
    112 7miz:F1 (3.4) BS02 GDP ? GO:0000226 ... I7BFC9 34031406
    113 7miz:c (3.4) BS01 peptide ? GO:0004791 ... Q8MPF4 34031406
    114 7miz:d (3.4) BS01 peptide ? GO:0004791 ... Q8MPF4 34031406
    115 7miz:e (3.4) BS01 peptide ? GO:0004791 ... Q8MPF4 34031406
    116 7miz:f (3.4) BS01 peptide ? GO:0004791 ... Q8MPF4 34031406
    117 7miz:g (3.4) BS01 peptide ? GO:0004791 ... Q8MPF4 34031406
    118 7miz:h (3.4) BS01 peptide ? GO:0004791 ... Q8MPF4 34031406
    119 7miz:j (3.4) BS01 peptide ? GO:0004791 ... Q8MPF4 34031406
    120 7miz:k (3.4) BS01 peptide ? GO:0004791 ... A0A7J6K232 34031406
    121 7miz:m (3.4) BS01 peptide ? GO:0004791 ... Q8MPF4 34031406
    122 7miz:n (3.4) BS01 peptide ? GO:0004791 ... Q8MPF4 34031406
    123 7miz:o (3.4) BS01 peptide ? GO:0004791 ... Q8MPF4 34031406
    124 7miz:p (3.4) BS01 peptide ? GO:0004791 ... Q8MPF4 34031406
    125 7miz:q (3.4) BS01 peptide ? GO:0004791 ... Q8MPF4 34031406
    126 7miz:r (3.4) BS01 peptide ? GO:0004791 ... Q8MPF4 34031406
    127 7miz:s (3.4) BS01 peptide ? GO:0004791 ... Q8MPF4 34031406
    128 7miz:t (3.4) BS01 peptide ? GO:0004791 ... Q8MPF4 34031406
    129 7miz:u (3.4) BS01 peptide ? GO:0004791 ... Q8MPF4 34031406
    130 7miz:v (3.4) BS01 peptide ? GO:0004791 ... Q8MPF4 34031406
    131 7miz:x (3.4) BS01 peptide ? GO:0004791 ... A0A7J6K232 34031406
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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