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BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7m4w:0 (2.55) BS01 rna N/A GO:0003735 ... N/A 34044590
    2 7m4w:1 (2.55) BS01 rna N/A GO:0003735 ... N/A 34044590
    3 7m4w:2 (2.55) BS01 rna ? GO:0003735 ... B7I693 34044590
    4 7m4w:3 (2.55) BS01 rna N/A GO:0003735 ... N/A 34044590
    5 7m4w:3 (2.55) BS02 ZN N/A GO:0003735 ... N/A 34044590
    6 7m4w:C (2.55) BS01 rna ? GO:0002181 ... B7IA36 34044590
    7 7m4w:D (2.55) BS01 rna ? GO:0003735 ... B7IA39 34044590
    8 7m4w:E (2.55) BS01 rna ? GO:0003735 ... B7IA38 34044590
    9 7m4w:F (2.55) BS01 rna ? GO:0000049 ... B7IA27 34044590
    10 7m4w:F (2.55) BS02 rna ? GO:0000049 ... B7IA27 34044590
    11 7m4w:G (2.55) BS01 rna ? GO:0002181 ... B7IA24 34044590
    12 7m4w:H (2.55) BS01 rna ? GO:0003735 ... B7IBC3 34044590
    13 7m4w:I (2.55) BS01 rna ? GO:0003729 ... B7I9B0 34044590
    14 7m4w:J (2.55) BS01 rna ? GO:0003735 ... N9NZ44 34044590
    15 7m4w:K (2.55) BS01 rna ? GO:0003735 ... B7IA20 34044590
    16 7m4w:K (2.55) BS02 MG ? GO:0003735 ... B7IA20 34044590
    17 7m4w:L (2.55) BS01 rna ? GO:0000049 ... B7IA32 34044590
    18 7m4w:M (2.55) BS01 rna ? GO:0003735 ... B7IA13 34044590
    19 7m4w:N (2.55) BS01 rna ? GO:0003735 ... B7IA23 34044590
    20 7m4w:N (2.55) BS02 rna ? GO:0003735 ... B7IA23 34044590
    21 7m4w:O (2.55) BS01 rna ? GO:0003735 ... B7IAS9 34044590
    22 7m4w:O (2.55) BS02 rna ? GO:0003735 ... B7IAS9 34044590
    23 7m4w:P (2.55) BS01 rna ? GO:0000027 ... V5VGC9 34044590
    24 7m4w:Q (2.55) BS01 rna ? GO:0003723 ... B7I6V9 34044590
    25 7m4w:R (2.55) BS01 rna ? GO:0003735 ... A0A009I821 34044590
    26 7m4w:S (2.55) BS01 rna ? GO:0000027 ... B7IA37 34044590
    27 7m4w:T (2.55) BS01 rna ? GO:0003723 ... B7IA28 34044590
    28 7m4w:U (2.55) BS01 rna ? GO:0003723 ... B7I7B6 34044590
    29 7m4w:V (2.55) BS01 rna ? GO:0003735 ... B7I6V8 34044590
    30 7m4w:V (2.55) BS02 rna ? GO:0003735 ... B7I6V8 34044590
    31 7m4w:W (2.55) BS01 rna N/A GO:0003735 ... N/A 34044590
    32 7m4w:X (2.55) BS01 rna ? GO:0003735 ... B7IA31 34044590
    33 7m4w:Y (2.55) BS01 rna N/A GO:0003735 ... N/A 34044590
    34 7m4w:Z (2.55) BS01 rna ? GO:0003735 ... B7I7A4 34044590
    35 7m4w:b (2.55) BS01 rna ? GO:0003735 ... V5VBC2 34044590
    36 7m4w:c (2.55) BS01 rna ? GO:0003676 ... V5V9N0 34044590
    37 7m4w:d (2.55) BS01 rna ? GO:0003723 ... B7IA15 34044590
    38 7m4w:e (2.55) BS01 rna ? GO:0003723 ... B7IA22 34044590
    39 7m4w:f (2.55) BS01 rna ? GO:0003735 ... B7IBC1 34044590
    40 7m4w:g (2.55) BS01 rna ? GO:0000028 ... B7I7S0 34044590
    41 7m4w:h (2.55) BS01 rna ? GO:0003735 ... B7IA25 34044590
    42 7m4w:i (2.55) BS01 rna ? GO:0003723 ... V5VBA5 34044590
    43 7m4w:j (2.55) BS01 rna N/A GO:0003723 ... N/A 34044590
    44 7m4w:k (2.55) BS01 rna ? GO:0003735 ... A0A4R0F9S8 34044590
    45 7m4w:l (2.55) BS01 rna ? GO:0000049 ... B7I7R9 34044590
    46 7m4w:m (2.55) BS01 rna ? GO:0000049 ... B7IA17 34044590
    47 7m4w:n (2.55) BS01 rna ? GO:0003735 ... B7IA26 34044590
    48 7m4w:o (2.55) BS01 rna ? GO:0003735 ... B7I3U0 34044590
    49 7m4w:o (2.55) BS02 rna ? GO:0003735 ... B7I3U0 34044590
    50 7m4w:p (2.55) BS01 rna ? GO:0003735 ... A0A1V3DIZ9 34044590
    51 7m4w:q (2.55) BS01 rna ? GO:0003735 ... B7IA30 34044590
    52 7m4w:r (2.55) BS01 rna N/A GO:0003735 ... N/A 34044590
    53 7m4w:s (2.55) BS01 rna ? GO:0000028 ... B7IA35 34044590
    54 7m4w:t (2.55) BS01 rna ? GO:0003723 ... B7I5N9 34044590
    55 7m4w:u (2.55) BS01 rna N/A GO:0003735 ... N/A 34044590
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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