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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7lbm:A (4.8) BS01 MG 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 33707221
    2 7lbm:A (4.8) BS02 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 33707221
    3 7lbm:A (4.8) BS03 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 33707221
    4 7lbm:A (4.8) BS04 MG 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 33707221
    5 7lbm:B (4.8) BS01 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P30876 33707221
    6 7lbm:C (4.8) BS01 ZN ? GO:0000428 ... P19387 33707221
    7 7lbm:I (4.8) BS01 ZN ? GO:0000428 ... P36954 33707221
    8 7lbm:I (4.8) BS02 ZN ? GO:0000428 ... P36954 33707221
    9 7lbm:J (4.8) BS01 ZN ? GO:0000428 ... P62875 33707221
    10 7lbm:L (4.8) BS01 ZN ? GO:0000428 ... P53803 33707221
    11 7lbm:M (4.8) BS01 dna ? GO:0000979 ... P52655 33707221
    12 7lbm:O (4.8) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 33707221
    13 7lbm:O (4.8) BS02 ZN 2.3.1.48 GO:0000776 ... Q00403 33707221
    14 7lbm:P (4.8) BS01 dna ? GO:0000785 ... P20226 33707221
    15 7lbm:P (4.8) BS02 dna ? GO:0000785 ... P20226 33707221
    16 7lbm:Q (4.8) BS01 ZN ? GO:0001113 ... P29083 33707221
    17 7lbm:T (4.8) BS01 dna 3.6.4.12 GO:0003677 ... P13984 33707221
    18 7lbm:T (4.8) BS02 dna 3.6.4.12 GO:0003677 ... P13984 33707221
    19 7lbm:W (4.8) BS01 dna 5.6.2.4 GO:0000112 ... P19447 33707221
    20 7lbm:W (4.8) BS02 dna 5.6.2.4 GO:0000112 ... P19447 33707221
    21 7lbm:X (4.8) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 33707221
    22 7lbm:a (4.8) BS01 ZN ? GO:0000438 ... Q13888 33707221
    23 7lbm:a (4.8) BS02 ZN ? GO:0000438 ... Q13888 33707221
    24 7lbm:b (4.8) BS01 ZN ? GO:0000438 ... Q13889 33707221
    25 7lbm:d (4.8) BS01 ZN ? GO:0000082 ... P51948 33707221
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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