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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7k53:A (3.2) BS01 rna ? GO:0002181 ... P0A7M9 34330903
    2 7k53:B (3.2) BS01 rna ? GO:0000027 ... P0A7N4 34330903
    3 7k53:C (3.2) BS01 rna ? GO:0000027 ... P0A7N9 34330903
    4 7k53:D (3.2) BS01 rna ? GO:0002181 ... P0A7P5 34330903
    5 7k53:E (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 34330903
    6 7k53:F (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 34330903
    7 7k53:G (3.2) BS01 rna ? GO:0000028 ... P0A7V0 34330903
    8 7k53:H (3.2) BS01 rna ? GO:0003676 ... P0A7V3 34330903
    9 7k53:I (3.2) BS01 rna ? GO:0000028 ... P0A7V8 34330903
    10 7k53:J (3.2) BS01 rna ? GO:0000028 ... P0A7W1 34330903
    11 7k53:K (3.2) BS01 rna ? GO:0003735 ... P02358 34330903
    12 7k53:L (3.2) BS01 rna ? GO:0003723 ... P02359 34330903
    13 7k53:L (3.2) BS02 rna ? GO:0003723 ... P02359 34330903
    14 7k53:L (3.2) BS03 rna ? GO:0003723 ... P02359 34330903
    15 7k53:M (3.2) BS01 rna ? GO:0000028 ... P0A7W7 34330903
    16 7k53:N (3.2) BS01 rna ? GO:0000049 ... P0A7X3 34330903
    17 7k53:O (3.2) BS01 rna ? GO:0000049 ... P0A7R5 34330903
    18 7k53:P (3.2) BS01 rna ? GO:0002181 ... P0A7R9 34330903
    19 7k53:Q (3.2) BS01 rna ? GO:0000049 ... P0A7S3 34330903
    20 7k53:R (3.2) BS01 rna ? GO:0000049 ... P0A7S9 34330903
    21 7k53:R (3.2) BS02 rna ? GO:0000049 ... P0A7S9 34330903
    22 7k53:S (3.2) BS01 rna ? GO:0000028 ... P0AG59 34330903
    23 7k53:T (3.2) BS01 rna ? GO:0000028 ... P0ADZ4 34330903
    24 7k53:T (3.2) BS02 rna ? GO:0000028 ... P0ADZ4 34330903
    25 7k53:U (3.2) BS01 rna ? GO:0000028 ... P0A7T3 34330903
    26 7k53:V (3.2) BS01 rna ? GO:0000028 ... P0AG63 34330903
    27 7k53:W (3.2) BS01 rna ? GO:0003735 ... P0A7T7 34330903
    28 7k53:X (3.2) BS01 rna ? GO:0003723 ... P0A7U3 34330903
    29 7k53:Y (3.2) BS01 rna ? GO:0000028 ... P0A7U7 34330903
    30 7k53:Z (3.2) BS01 rna ? GO:0000028 ... P68679 34330903
    31 7k53:Z (3.2) BS02 rna ? GO:0000028 ... P68679 34330903
    32 7k53:a (3.2) BS01 rna ? GO:0000027 ... P0A7L0 34330903
    33 7k53:b (3.2) BS01 rna ? GO:0000027 ... P60422 34330903
    34 7k53:c (3.2) BS01 rna ? GO:0000027 ... P60438 34330903
    35 7k53:d (3.2) BS01 rna ? GO:0001070 ... P60723 34330903
    36 7k53:e (3.2) BS01 rna ? GO:0000027 ... P62399 34330903
    37 7k53:e (3.2) BS02 rna ? GO:0000027 ... P62399 34330903
    38 7k53:e (3.2) BS03 rna ? GO:0000027 ... P62399 34330903
    39 7k53:f (3.2) BS01 rna ? GO:0000027 ... P0AG55 34330903
    40 7k53:g (3.2) BS01 rna ? GO:0002181 ... P0A7R1 34330903
    41 7k53:h (3.2) BS01 rna ? GO:0003735 ... P0A7J3 34330903
    42 7k53:i (3.2) BS01 rna ? GO:0000027 ... P0A7J7 34330903
    43 7k53:j (3.2) BS01 rna ? GO:0002181 ... P0AA10 34330903
    44 7k53:k (3.2) BS01 rna ? GO:0002181 ... P0ADY3 34330903
    45 7k53:k (3.2) BS02 rna ? GO:0002181 ... P0ADY3 34330903
    46 7k53:l (3.2) BS01 rna ? GO:0002181 ... P02413 34330903
    47 7k53:m (3.2) BS01 rna ? GO:0000027 ... P0ADY7 34330903
    48 7k53:m (3.2) BS02 rna ? GO:0000027 ... P0ADY7 34330903
    49 7k53:n (3.2) BS01 rna ? GO:0000027 ... P0AG44 34330903
    50 7k53:o (3.2) BS01 rna ? GO:0002181 ... P0C018 34330903
    51 7k53:o (3.2) BS02 rna ? GO:0002181 ... P0C018 34330903
    52 7k53:p (3.2) BS01 rna ? GO:0000027 ... P0A7K6 34330903
    53 7k53:p (3.2) BS02 rna ? GO:0000027 ... P0A7K6 34330903
    54 7k53:q (3.2) BS01 rna ? GO:0000027 ... P0A7L3 34330903
    55 7k53:r (3.2) BS01 rna ? GO:0002181 ... P0AG48 34330903
    56 7k53:s (3.2) BS01 rna ? GO:0002181 ... P61175 34330903
    57 7k53:t (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 34330903
    58 7k53:u (3.2) BS01 rna ? GO:0000027 ... P60624 34330903
    59 7k53:v (3.2) BS01 rna ? GO:0000027 ... P68919 34330903
    60 7k53:w (3.2) BS01 rna ? GO:0003735 ... P0A7L8 34330903
    61 7k53:w (3.2) BS02 rna ? GO:0003735 ... P0A7L8 34330903
    62 7k53:x (3.2) BS01 rna ? GO:0000027 ... P0A7M2 34330903
    63 7k53:y (3.2) BS01 rna ? GO:0000027 ... P0A7M6 34330903
    64 7k53:z (3.2) BS01 rna ? GO:0000027 ... P0AG51 34330903
    65 7k53:z (3.2) BS02 rna ? GO:0000027 ... P0AG51 34330903
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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