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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7egb:0 (3.3) BS01 ZN ? GO:0000082 ... P51948 33795473
    2 7egb:2 (3.3) BS01 ZN ? GO:0000438 ... Q13888 33795473
    3 7egb:2 (3.3) BS02 ZN ? GO:0000438 ... Q13888 33795473
    4 7egb:2 (3.3) BS03 ZN ? GO:0000438 ... Q13888 33795473
    5 7egb:3 (3.3) BS01 ZN ? GO:0000438 ... Q13889 33795473
    6 7egb:3 (3.3) BS02 ZN ? GO:0000438 ... Q13889 33795473
    7 7egb:6 (3.3) BS01 dna 5.6.2.4 GO:0000112 ... P19447 33795473
    8 7egb:6 (3.3) BS02 dna 5.6.2.4 GO:0000112 ... P19447 33795473
    9 7egb:7 (3.3) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 33795473
    10 7egb:P (3.3) BS01 dna ? GO:0000785 ... P20226 33795473
    11 7egb:P (3.3) BS02 dna ? GO:0000785 ... P20226 33795473
    12 7egb:R (3.3) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 33795473
    13 7egb:R (3.3) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 33795473
    14 7egb:R (3.3) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 33795473
    15 7egb:T (3.3) BS01 dna 3.6.4.12 GO:0003677 ... P13984 33795473
    16 7egb:U (3.3) BS01 ZN ? GO:0001113 ... P29083 33795473
    17 7egb:o (3.3) BS01 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 33795473
    18 7egb:o (3.3) BS02 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 33795473
    19 7egb:o (3.3) BS03 MG 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 33795473
    20 7egb:p (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 33795473
    21 7egb:q (3.3) BS01 ZN ? GO:0000428 ... I3LCH3 33795473
    22 7egb:w (3.3) BS01 ZN ? GO:0000428 ... P60899 33795473
    23 7egb:w (3.3) BS02 ZN ? GO:0000428 ... P60899 33795473
    24 7egb:x (3.3) BS01 ZN N/A GO:0003677 ... N/A 33795473
    25 7egb:z (3.3) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 33795473
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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