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BioLiP
Download all results in tab-seperated text for 46 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7dvq:0 (2.89) BS01 ZN ? GO:0005515 ... Q9P021 33509932
    2 7dvq:0 (2.89) BS02 ZN ? GO:0005515 ... Q9P021 33509932
    3 7dvq:1 (2.89) BS01 rna ? GO:0000245 ... O75533 33509932
    4 7dvq:1 (2.89) BS02 rna ? GO:0000245 ... O75533 33509932
    5 7dvq:2 (2.89) BS01 rna ? GO:0000398 ... Q13435 33509932
    6 7dvq:2 (2.89) BS02 rna ? GO:0000398 ... Q13435 33509932
    7 7dvq:3 (2.89) BS01 peptide ? GO:0000124 ... Q15393 33509932
    8 7dvq:6 (2.89) BS01 rna ? GO:0000398 ... Q7RTV0 33509932
    9 7dvq:6 (2.89) BS02 rna ? GO:0000398 ... Q7RTV0 33509932
    10 7dvq:6 (2.89) BS03 ZN ? GO:0000398 ... Q7RTV0 33509932
    11 7dvq:6 (2.89) BS04 ZN ? GO:0000398 ... Q7RTV0 33509932
    12 7dvq:6 (2.89) BS05 ZN ? GO:0000398 ... Q7RTV0 33509932
    13 7dvq:9 (2.89) BS01 rna 2.3.2.27 GO:0000209 ... Q13356 33509932
    14 7dvq:A (2.89) BS01 rna ? GO:0000244 ... Q6P2Q9 33509932
    15 7dvq:A (2.89) BS02 rna ? GO:0000244 ... Q6P2Q9 33509932
    16 7dvq:A (2.89) BS03 rna ? GO:0000244 ... Q6P2Q9 33509932
    17 7dvq:A (2.89) BS04 rna ? GO:0000244 ... Q6P2Q9 33509932
    18 7dvq:A (2.89) BS05 peptide ? GO:0000244 ... Q6P2Q9 33509932
    19 7dvq:A (2.89) BS06 IHP ? GO:0000244 ... Q6P2Q9 33509932
    20 7dvq:C (2.89) BS01 GTP ? GO:0000398 ... Q15029 33509932
    21 7dvq:I (2.89) BS01 rna ? GO:0003676 ... Q5RL73 33509932
    22 7dvq:I (2.89) BS02 rna ? GO:0003676 ... Q5RL73 33509932
    23 7dvq:I (2.89) BS03 G5J ? GO:0003676 ... Q5RL73 33509932
    24 7dvq:J (2.89) BS01 rna ? GO:0000245 ... Q9BZJ0 33509932
    25 7dvq:K (2.89) BS01 rna ? GO:0005515 ... Q9H6L4 33509932
    26 7dvq:L (2.89) BS01 rna ? GO:0000077 ... Q99459 33509932
    27 7dvq:L (2.89) BS02 rna ? GO:0000077 ... Q99459 33509932
    28 7dvq:M (2.89) BS01 rna 2.3.2.27 GO:0000398 ... O15541 33509932
    29 7dvq:M (2.89) BS02 ZN 2.3.2.27 GO:0000398 ... O15541 33509932
    30 7dvq:R (2.89) BS01 rna ? GO:0000122 ... Q13573 33509932
    31 7dvq:V (2.89) BS01 peptide ? GO:0000398 ... Q9HCG8 33509932
    32 7dvq:Y (2.89) BS01 rna ? GO:0000398 ... Q9Y388 33509932
    33 7dvq:c (2.89) BS01 rna ? GO:0000243 ... P62314 33509932
    34 7dvq:e (2.89) BS01 rna ? GO:0000245 ... P62304 33509932
    35 7dvq:f (2.89) BS01 rna ? GO:0000387 ... P62306 33509932
    36 7dvq:g (2.89) BS01 rna ? GO:0000245 ... P62308 33509932
    37 7dvq:h (2.89) BS01 rna ? GO:0000243 ... P62318 33509932
    38 7dvq:i (2.89) BS01 rna ? GO:0000387 ... P14678 33509932
    39 7dvq:j (2.89) BS01 rna ? GO:0000243 ... P62314 33509932
    40 7dvq:k (2.89) BS01 rna ? GO:0000245 ... P62316 33509932
    41 7dvq:l (2.89) BS01 rna ? GO:0000245 ... P62304 33509932
    42 7dvq:m (2.89) BS01 rna ? GO:0000387 ... P62306 33509932
    43 7dvq:n (2.89) BS01 rna ? GO:0000245 ... P62308 33509932
    44 7dvq:v (2.89) BS01 rna ? GO:0000380 ... Q9BWG6 33509932
    45 7dvq:v (2.89) BS02 rna ? GO:0000380 ... Q9BWG6 33509932
    46 7dvq:v (2.89) BS03 ZN ? GO:0000380 ... Q9BWG6 33509932
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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