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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7dgz:8 (3.8) BS01 peptide 7.1.1.2 GO:0005739 ... P25708 34913730
    2 7dgz:8 (3.8) BS02 FMN 7.1.1.2 GO:0005739 ... P25708 34913730
    3 7dgz:8 (3.8) BS03 SF4 7.1.1.2 GO:0005739 ... P25708 34913730
    4 7dgz:9 (3.8) BS01 peptide 7.1.1.2 GO:0016491 ... P04394 34913730
    5 7dgz:9 (3.8) BS02 FES 7.1.1.2 GO:0016491 ... P04394 34913730
    6 7dgz:A (3.8) BS01 SF4 7.1.1.2 GO:0005739 ... P15690 34913730
    7 7dgz:A (3.8) BS02 SF4 7.1.1.2 GO:0005739 ... P15690 34913730
    8 7dgz:A (3.8) BS03 FES 7.1.1.2 GO:0005739 ... P15690 34913730
    9 7dgz:D (3.8) BS01 SF4 7.1.1.2 GO:0008137 ... P42026 34913730
    10 7dgz:E (3.8) BS01 SF4 7.1.1.2 GO:0016020 ... P42028 34913730
    11 7dgz:E (3.8) BS02 SF4 7.1.1.2 GO:0016020 ... P42028 34913730
    12 7dgz:I (3.8) BS01 ZN ? GO:0006120 ... P23934 34913730
    13 7dgz:R (3.8) BS01 NAP ? GO:0005739 ... P34943 34913730
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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