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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7dgq:8 (5.0) BS01 peptide 7.1.1.2 GO:0005739 ... P25708 34913730
    2 7dgq:8 (5.0) BS02 FMN 7.1.1.2 GO:0005739 ... P25708 34913730
    3 7dgq:8 (5.0) BS03 SF4 7.1.1.2 GO:0005739 ... P25708 34913730
    4 7dgq:9 (5.0) BS01 peptide 7.1.1.2 GO:0016491 ... P04394 34913730
    5 7dgq:9 (5.0) BS02 FES 7.1.1.2 GO:0016491 ... P04394 34913730
    6 7dgq:A (5.0) BS01 SF4 7.1.1.2 GO:0005739 ... P15690 34913730
    7 7dgq:A (5.0) BS02 SF4 7.1.1.2 GO:0005739 ... P15690 34913730
    8 7dgq:A (5.0) BS03 FES 7.1.1.2 GO:0005739 ... P15690 34913730
    9 7dgq:A2 (5.0) BS01 UQ2 ? GO:0005739 ... P00129 34913730
    10 7dgq:A5 (5.0) BS01 ZN ? GO:0005739 ... P00428 34913730
    11 7dgq:C1 (5.0) BS01 CU 7.1.1.9 GO:0004129 ... P68530 34913730
    12 7dgq:C1 (5.0) BS02 CU 7.1.1.9 GO:0004129 ... P68530 34913730
    13 7dgq:C3 (5.0) BS01 CU 7.1.1.9 GO:0004129 ... P00396 34913730
    14 7dgq:C3 (5.0) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 34913730
    15 7dgq:C3 (5.0) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 34913730
    16 7dgq:C3 (5.0) BS04 MG 7.1.1.9 GO:0004129 ... P00396 34913730
    17 7dgq:D (5.0) BS01 SF4 7.1.1.2 GO:0008137 ... P42026 34913730
    18 7dgq:E (5.0) BS01 SF4 7.1.1.2 GO:0016020 ... P42028 34913730
    19 7dgq:E (5.0) BS02 SF4 7.1.1.2 GO:0016020 ... P42028 34913730
    20 7dgq:I (5.0) BS01 ZN ? GO:0006120 ... P23934 34913730
    21 7dgq:R (5.0) BS01 NAP ? GO:0005739 ... P34943 34913730
    22 7dgq:k (5.0) BS01 peptide ? GO:0005739 ... P31800 34913730
    23 7dgq:l (5.0) BS01 peptide ? GO:0004222 ... P23004 34913730
    24 7dgq:m (5.0) BS01 HEM ? GO:0005739 ... P00157 34913730
    25 7dgq:m (5.0) BS02 HEM ? GO:0005739 ... P00157 34913730
    26 7dgq:o (5.0) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 34913730
    27 7dgq:w (5.0) BS01 peptide ? GO:0005739 ... P31800 34913730
    28 7dgq:x (5.0) BS01 peptide ? GO:0004222 ... P23004 34913730
    29 7dgq:y (5.0) BS01 HEM ? GO:0005739 ... P00157 34913730
    30 7dgq:y (5.0) BS02 HEM ? GO:0005739 ... P00157 34913730
    31 7dgq:z (5.0) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 34913730
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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