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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7cro:B (3.75) BS01 dna ? GO:0000786 ... P62799 33361816
    2 7cro:C (3.75) BS01 dna ? GO:0000786 ... P06897 33361816
    3 7cro:E (3.75) BS01 dna ? GO:0000786 ... Q92133 33361816
    4 7cro:E (3.75) BS02 dna ? GO:0000786 ... Q92133 33361816
    5 7cro:F (3.75) BS01 dna ? GO:0000786 ... P62799 33361816
    6 7cro:G (3.75) BS01 dna ? GO:0000786 ... P06897 33361816
    7 7cro:H (3.75) BS01 dna ? GO:0000786 ... P02281 33361816
    8 7cro:I (3.75) BS01 dna 2.1.1.357 GO:0005634 ... O96028 33361816
    9 7cro:I (3.75) BS02 SAM 2.1.1.357 GO:0005634 ... O96028 33361816
    10 7cro:I (3.75) BS03 ZN 2.1.1.357 GO:0005634 ... O96028 33361816
    11 7cro:I (3.75) BS04 ZN 2.1.1.357 GO:0005634 ... O96028 33361816
    12 7cro:I (3.75) BS05 ZN 2.1.1.357 GO:0005634 ... O96028 33361816
    13 7cro:M (3.75) BS01 dna ? GO:0000786 ... Q92133 33361816
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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