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BioLiP
Download all results in tab-seperated text for 43 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7cgo:Ca (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    2 7cgo:Cb (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    3 7cgo:Cc (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    4 7cgo:Cd (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    5 7cgo:Cf (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    6 7cgo:Cg (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    7 7cgo:Ch (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    8 7cgo:Ci (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    9 7cgo:Cm (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    10 7cgo:Cm (3.9) BS02 peptide ? GO:0003774 ... P15928 33882274
    11 7cgo:Cn (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    12 7cgo:Cn (3.9) BS02 peptide ? GO:0003774 ... P15928 33882274
    13 7cgo:Cr (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    14 7cgo:Cs (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    15 7cgo:Ct (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    16 7cgo:Cv (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    17 7cgo:Cy (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    18 7cgo:Ea (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    19 7cgo:Ec (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    20 7cgo:Ed (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    21 7cgo:Ee (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    22 7cgo:Ef (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    23 7cgo:Eh (3.9) BS01 peptide ? GO:0003774 ... P15928 33882274
    24 7cgo:a (3.9) BS01 peptide ? GO:0009288 ... P16323 33882274
    25 7cgo:b (3.9) BS01 peptide ? GO:0009288 ... P16323 33882274
    26 7cgo:b (3.9) BS02 peptide ? GO:0009288 ... P16323 33882274
    27 7cgo:c (3.9) BS01 peptide ? GO:0009288 ... P16323 33882274
    28 7cgo:d (3.9) BS01 peptide ? GO:0009288 ... P16323 33882274
    29 7cgo:e (3.9) BS01 peptide ? GO:0009288 ... P16323 33882274
    30 7cgo:f (3.9) BS01 peptide ? GO:0009288 ... P0A1I7 33882274
    31 7cgo:h (3.9) BS01 peptide ? GO:0009288 ... P0A1I7 33882274
    32 7cgo:i (3.9) BS01 peptide ? GO:0009288 ... P0A1I7 33882274
    33 7cgo:j (3.9) BS01 peptide ? GO:0009288 ... P0A1I7 33882274
    34 7cgo:k (3.9) BS01 peptide ? GO:0009288 ... P16437 33882274
    35 7cgo:k (3.9) BS02 peptide ? GO:0009288 ... P16437 33882274
    36 7cgo:l (3.9) BS01 peptide ? GO:0009288 ... P16437 33882274
    37 7cgo:l (3.9) BS02 peptide ? GO:0009288 ... P16437 33882274
    38 7cgo:m (3.9) BS01 peptide ? GO:0009288 ... P16437 33882274
    39 7cgo:m (3.9) BS02 peptide ? GO:0009288 ... P16437 33882274
    40 7cgo:n (3.9) BS01 peptide ? GO:0009288 ... P16437 33882274
    41 7cgo:n (3.9) BS02 peptide ? GO:0009288 ... P16437 33882274
    42 7cgo:o (3.9) BS01 peptide ? GO:0009288 ... P16437 33882274
    43 7cgo:p (3.9) BS01 peptide ? GO:0009288 ... P0A1I7 33882274
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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