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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7b0y:A (3.6) BS01 dna 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P11414 33446560
    2 7b0y:A (3.6) BS02 rna 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P11414 33446560
    3 7b0y:A (3.6) BS03 dna 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P11414 33446560
    4 7b0y:A (3.6) BS04 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P11414 33446560
    5 7b0y:A (3.6) BS05 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P11414 33446560
    6 7b0y:A (3.6) BS06 MG 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000428 ... P11414 33446560
    7 7b0y:B (3.6) BS01 dna 2.7.7.6 GO:0000428 ... A0A0B8RVL1 33446560
    8 7b0y:B (3.6) BS02 rna 2.7.7.6 GO:0000428 ... A0A0B8RVL1 33446560
    9 7b0y:B (3.6) BS03 dna 2.7.7.6 GO:0000428 ... A0A0B8RVL1 33446560
    10 7b0y:B (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... A0A0B8RVL1 33446560
    11 7b0y:C (3.6) BS01 ZN ? GO:0000428 ... I3LCH3 33446560
    12 7b0y:E (3.6) BS01 dna ? GO:0001054 ... I3LSI7 33446560
    13 7b0y:I (3.6) BS01 ZN ? GO:0000428 ... P60899 33446560
    14 7b0y:I (3.6) BS02 ZN ? GO:0000428 ... P60899 33446560
    15 7b0y:J (3.6) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 33446560
    16 7b0y:L (3.6) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 33446560
    17 7b0y:b (3.6) BS01 rna ? GO:0000398 ... P08621 33446560
    18 7b0y:c (3.6) BS01 rna ? GO:0000398 ... P09012 33446560
    19 7b0y:e (3.6) BS01 rna ? GO:0000245 ... P62316 33446560
    20 7b0y:f (3.6) BS01 rna ? GO:0000387 ... P62306 33446560
    21 7b0y:g (3.6) BS01 rna ? GO:0000245 ... P62304 33446560
    22 7b0y:h (3.6) BS01 rna ? GO:0000245 ... P62308 33446560
    23 7b0y:i (3.6) BS01 rna ? GO:0000243 ... P62318 33446560
    24 7b0y:j (3.6) BS01 rna ? GO:0003723 ... Q66K91 33446560
    25 7b0y:k (3.6) BS01 rna ? GO:0000243 ... P62314 33446560
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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