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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7asn:1 (2.73) BS01 rna ? GO:0003735 ... Q2FYU6 N/A
    2 7asn:2 (2.73) BS01 rna ? GO:0003735 ... Q2FUQ0 N/A
    3 7asn:3 (2.73) BS01 rna ? GO:0003735 ... Q2FXQ0 N/A
    4 7asn:D (2.73) BS01 rna ? GO:0003735 ... Q2FW06 N/A
    5 7asn:E (2.73) BS01 rna ? GO:0003735 ... Q2FW07 N/A
    6 7asn:F (2.73) BS01 rna ? GO:0002181 ... P60430 N/A
    7 7asn:G (2.73) BS01 rna ? GO:0003735 ... Q2FW16 N/A
    8 7asn:H (2.73) BS01 rna ? GO:0003729 ... Q2FW38 N/A
    9 7asn:L (2.73) BS01 rna ? GO:0003735 ... P0A0F8 N/A
    10 7asn:M (2.73) BS01 rna ? GO:0003735 ... Q2FW22 N/A
    11 7asn:M (2.73) BS02 rna ? GO:0003735 ... Q2FW22 N/A
    12 7asn:N (2.73) BS01 rna ? GO:0003735 ... Q2FZ42 N/A
    13 7asn:O (2.73) BS01 rna ? GO:0000027 ... Q2FXQ1 N/A
    14 7asn:P (2.73) BS01 rna ? GO:0003723 ... Q2FXS8 N/A
    15 7asn:Q (2.73) BS01 rna ? GO:0003735 ... Q2FW11 N/A
    16 7asn:R (2.73) BS01 rna ? GO:0000027 ... Q2FW08 N/A
    17 7asn:S (2.73) BS01 rna ? GO:0003723 ... Q2FW17 N/A
    18 7asn:T (2.73) BS01 rna ? GO:0003735 ... Q2FJE0 N/A
    19 7asn:V (2.73) BS01 rna ? GO:0003735 ... Q2FZ60 N/A
    20 7asn:W (2.73) BS01 rna ? GO:0003735 ... Q2FW14 N/A
    21 7asn:X (2.73) BS01 rna ? GO:0003735 ... P0A0G2 N/A
    22 7asn:Y (2.73) BS01 rna ? GO:0000049 ... Q2FW13 N/A
    23 7asn:a (2.73) BS01 rna ? GO:0003735 ... Q2FXT0 N/A
    24 7asn:b (2.73) BS01 rna ? GO:0003735 ... Q2FZF1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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