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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7aqd:C (3.1) BS01 rna ? GO:0002181 ... P42919 33259811
    2 7aqd:D (3.1) BS01 rna ? GO:0003735 ... P42920 33259811
    3 7aqd:E (3.1) BS01 rna ? GO:0003735 ... P42921 33259811
    4 7aqd:F (3.1) BS01 rna ? GO:0000049 ... P12877 33259811
    5 7aqd:F (3.1) BS02 rna ? GO:0000049 ... P12877 33259811
    6 7aqd:G (3.1) BS01 rna ? GO:0002181 ... P46898 33259811
    7 7aqd:I (3.1) BS01 rna ? GO:0003735 ... Q06796 33259811
    8 7aqd:J (3.1) BS01 rna ? GO:0003729 ... P70974 33259811
    9 7aqd:K (3.1) BS01 rna ? GO:0003735 ... P12875 33259811
    10 7aqd:L (3.1) BS01 rna ? GO:0003735 ... P19946 33259811
    11 7aqd:M (3.1) BS01 rna ? GO:0000049 ... P14577 33259811
    12 7aqd:M (3.1) BS02 rna ? GO:0000049 ... P14577 33259811
    13 7aqd:N (3.1) BS01 rna ? GO:0003735 ... P20277 33259811
    14 7aqd:O (3.1) BS01 rna ? GO:0003735 ... P46899 33259811
    15 7aqd:O (3.1) BS02 rna ? GO:0003735 ... P46899 33259811
    16 7aqd:Q (3.1) BS01 rna ? GO:0000027 ... P55873 33259811
    17 7aqd:R (3.1) BS01 rna ? GO:0000049 ... O34693 33259811
    18 7aqd:R (3.1) BS02 rna ? GO:0000049 ... O34693 33259811
    19 7aqd:S (3.1) BS01 rna ? GO:0003735 ... P42060 33259811
    20 7aqd:U (3.1) BS01 rna ? GO:0003677 ... P0CI78 33259811
    21 7aqd:V (3.1) BS01 rna ? GO:0003735 ... P05657 33259811
    22 7aqd:V (3.1) BS02 rna ? GO:0003735 ... P05657 33259811
    23 7aqd:V (3.1) BS03 rna ? GO:0003735 ... P05657 33259811
    24 7aqd:X (3.1) BS01 rna ? GO:0003735 ... P37807 33259811
    25 7aqd:Z (3.1) BS01 rna ? GO:0003735 ... P19947 33259811
    26 7aqd:a (3.1) BS01 rna ? GO:0003735 ... O31742 33259811
    27 7aqd:b (3.1) BS01 rna ? GO:0003735 ... O34687 33259811
    28 7aqd:c (3.1) BS01 rna ? GO:0003735 ... P56849 33259811
    29 7aqd:d (3.1) BS01 rna ? GO:0003735 ... P05647 33259811
    30 7aqd:e (3.1) BS01 rna ? GO:0003735 ... P55874 33259811
    31 7aqd:f (3.1) BS01 rna ? GO:0003735 ... P20278 33259811
    32 7aqd:g (3.1) BS01 rna ? GO:0003723 ... P26908 33259811
    33 7aqd:h (3.1) BS01 rna ? GO:0000027 ... P42924 33259811
    34 7aqd:i (3.1) BS01 rna ? GO:0003735 ... P12873 33259811
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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