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BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7aju:CB (3.8) BS01 rna 2.1.1.- GO:0000451 ... P15646 33326748
    2 7aju:CD (3.8) BS01 rna ? GO:0000154 ... Q12460 33326748
    3 7aju:CE (3.8) BS01 rna ? GO:0000447 ... Q12499 33326748
    4 7aju:CE (3.8) BS02 rna ? GO:0000447 ... Q12499 33326748
    5 7aju:CF (3.8) BS01 rna ? GO:0000245 ... P39990 33326748
    6 7aju:CG (3.8) BS01 rna ? GO:0000245 ... P39990 33326748
    7 7aju:CH (3.8) BS01 rna ? GO:0000447 ... Q06506 33326748
    8 7aju:CH (3.8) BS02 rna ? GO:0000447 ... Q06506 33326748
    9 7aju:CI (3.8) BS01 rna ? GO:0003723 ... P32899 33326748
    10 7aju:CI (3.8) BS02 rna ? GO:0003723 ... P32899 33326748
    11 7aju:CJ (3.8) BS01 rna ? GO:0005515 ... P53941 33326748
    12 7aju:CK (3.8) BS01 rna ? GO:0000447 ... P47083 33326748
    13 7aju:CL (3.8) BS01 rna ? GO:0000462 ... Q08965 33326748
    14 7aju:CL (3.8) BS02 GTP ? GO:0000462 ... Q08965 33326748
    15 7aju:CM (3.8) BS01 rna ? GO:0000447 ... Q08096 33326748
    16 7aju:CN (3.8) BS01 rna ? GO:0000028 ... P25368 33326748
    17 7aju:DA (3.8) BS01 rna ? GO:0000462 ... P33442 33326748
    18 7aju:DE (3.8) BS01 rna ? GO:0002181 ... P0CX35 33326748
    19 7aju:DF (3.8) BS01 rna ? GO:0000028 ... P26783 33326748
    20 7aju:DG (3.8) BS01 rna ? GO:0000462 ... P0CX37 33326748
    21 7aju:DH (3.8) BS01 rna ? GO:0002181 ... P26786 33326748
    22 7aju:DI (3.8) BS01 rna ? GO:0000462 ... P0CX39 33326748
    23 7aju:DJ (3.8) BS01 rna ? GO:0000462 ... O13516 33326748
    24 7aju:DL (3.8) BS01 rna ? GO:0000028 ... P0CX47 33326748
    25 7aju:DN (3.8) BS01 rna ? GO:0000462 ... P05756 33326748
    26 7aju:DO (3.8) BS01 rna ? GO:0000028 ... P06367 33326748
    27 7aju:DQ (3.8) BS01 rna ? GO:0000462 ... P0CX51 33326748
    28 7aju:DS (3.8) BS01 rna ? GO:0000054 ... P0CX55 33326748
    29 7aju:DT (3.8) BS01 rna ? GO:0000028 ... P07280 33326748
    30 7aju:DW (3.8) BS01 rna ? GO:0002181 ... P0C0W1 33326748
    31 7aju:DX (3.8) BS01 rna ? GO:0000462 ... P0CX29 33326748
    32 7aju:DY (3.8) BS01 rna ? GO:0000462 ... P0CX31 33326748
    33 7aju:Db (3.8) BS01 rna ? GO:0000028 ... P35997 33326748
    34 7aju:Db (3.8) BS02 ZN ? GO:0000028 ... P35997 33326748
    35 7aju:Dc (3.8) BS01 rna ? GO:0000028 ... Q3E7X9 33326748
    36 7aju:EH (3.8) BS01 rna ? GO:0000176 ... Q08285 33326748
    37 7aju:EN (3.8) BS01 rna 3.6.4.13 GO:0000292 ... P47047 33326748
    38 7aju:JD (3.8) BS01 rna 3.6.4.13 GO:0000462 ... Q04217 33326748
    39 7aju:JG (3.8) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 33326748
    40 7aju:JJ (3.8) BS01 rna ? GO:0000056 ... Q99216 33326748
    41 7aju:JL (3.8) BS01 rna 2.1.1.183 GO:0000154 ... P41819 33326748
    42 7aju:JM (3.8) BS01 rna ? GO:0000447 ... Q12035 33326748
    43 7aju:JM (3.8) BS02 rna ? GO:0000447 ... Q12035 33326748
    44 7aju:JP (3.8) BS01 rna ? GO:0000462 ... P33750 33326748
    45 7aju:JP (3.8) BS02 rna ? GO:0000462 ... P33750 33326748
    46 7aju:UA (3.8) BS01 rna ? GO:0000028 ... P25635 33326748
    47 7aju:UB (3.8) BS01 rna ? GO:0000028 ... Q99207 33326748
    48 7aju:UC (3.8) BS01 rna ? GO:0000447 ... Q12136 33326748
    49 7aju:UC (3.8) BS02 rna ? GO:0000447 ... Q12136 33326748
    50 7aju:UD (3.8) BS01 rna ? GO:0000462 ... Q06679 33326748
    51 7aju:UG (3.8) BS01 rna ? GO:0000447 ... P40055 33326748
    52 7aju:UG (3.8) BS02 rna ? GO:0000447 ... P40055 33326748
    53 7aju:UG (3.8) BS03 rna ? GO:0000447 ... P40055 33326748
    54 7aju:UI (3.8) BS01 rna ? GO:0000049 ... P38882 33326748
    55 7aju:UJ (3.8) BS01 rna ? GO:0000447 ... P42945 33326748
    56 7aju:UK (3.8) BS01 rna ? GO:0000447 ... P34247 33326748
    57 7aju:UK (3.8) BS02 rna ? GO:0000447 ... P34247 33326748
    58 7aju:UL (3.8) BS01 rna ? GO:0000447 ... Q12220 33326748
    59 7aju:UM (3.8) BS01 rna ? GO:0000447 ... Q05946 33326748
    60 7aju:UO (3.8) BS01 rna ? GO:0000462 ... Q04305 33326748
    61 7aju:UO (3.8) BS02 rna ? GO:0000462 ... Q04305 33326748
    62 7aju:UQ (3.8) BS01 rna ? GO:0000462 ... Q02931 33326748
    63 7aju:UQ (3.8) BS02 rna ? GO:0000462 ... Q02931 33326748
    64 7aju:UR (3.8) BS01 rna ? GO:0000292 ... P40362 33326748
    65 7aju:UT (3.8) BS01 rna ? GO:0000447 ... P35194 33326748
    66 7aju:UU (3.8) BS01 rna ? GO:0003674 ... Q06078 33326748
    67 7aju:UV (3.8) BS01 rna ? GO:0000028 ... P53254 33326748
    68 7aju:UX (3.8) BS01 rna ? GO:0000447 ... Q05498 33326748
    69 7aju:UX (3.8) BS02 ZN ? GO:0000447 ... Q05498 33326748
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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