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BioLiP
Download all results in tab-seperated text for 90 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ajt:CD (4.6) BS01 rna ? GO:0000154 ... Q12460 33326748
    2 7ajt:CD (4.6) BS02 rna ? GO:0000154 ... Q12460 33326748
    3 7ajt:CE (4.6) BS01 rna ? GO:0000447 ... Q12499 33326748
    4 7ajt:CE (4.6) BS02 rna ? GO:0000447 ... Q12499 33326748
    5 7ajt:CF (4.6) BS01 rna ? GO:0000245 ... P39990 33326748
    6 7ajt:CG (4.6) BS01 rna ? GO:0000245 ... P39990 33326748
    7 7ajt:CH (4.6) BS01 rna ? GO:0000447 ... Q06506 33326748
    8 7ajt:CI (4.6) BS01 rna ? GO:0003723 ... P32899 33326748
    9 7ajt:CI (4.6) BS02 rna ? GO:0003723 ... P32899 33326748
    10 7ajt:CJ (4.6) BS01 rna ? GO:0005515 ... P53941 33326748
    11 7ajt:CK (4.6) BS01 rna ? GO:0000447 ... P47083 33326748
    12 7ajt:CL (4.6) BS01 rna ? GO:0000462 ... Q08965 33326748
    13 7ajt:CL (4.6) BS02 rna ? GO:0000462 ... Q08965 33326748
    14 7ajt:CL (4.6) BS03 rna ? GO:0000462 ... Q08965 33326748
    15 7ajt:CL (4.6) BS04 GTP ? GO:0000462 ... Q08965 33326748
    16 7ajt:CL (4.6) BS05 MG ? GO:0000462 ... Q08965 33326748
    17 7ajt:CM (4.6) BS01 rna ? GO:0000447 ... Q08096 33326748
    18 7ajt:CN (4.6) BS01 rna ? GO:0000028 ... P25368 33326748
    19 7ajt:DA (4.6) BS01 rna ? GO:0000462 ... P33442 33326748
    20 7ajt:DE (4.6) BS01 rna ? GO:0002181 ... P0CX35 33326748
    21 7ajt:DF (4.6) BS01 rna ? GO:0000028 ... P26783 33326748
    22 7ajt:DG (4.6) BS01 rna ? GO:0000462 ... P0CX37 33326748
    23 7ajt:DH (4.6) BS01 rna ? GO:0002181 ... P26786 33326748
    24 7ajt:DI (4.6) BS01 rna ? GO:0000462 ... P0CX39 33326748
    25 7ajt:DJ (4.6) BS01 rna ? GO:0000462 ... O13516 33326748
    26 7ajt:DL (4.6) BS01 rna ? GO:0000028 ... P0CX47 33326748
    27 7ajt:DN (4.6) BS01 rna ? GO:0000462 ... P05756 33326748
    28 7ajt:DO (4.6) BS01 rna ? GO:0000028 ... P06367 33326748
    29 7ajt:DQ (4.6) BS01 rna ? GO:0000462 ... P0CX51 33326748
    30 7ajt:DQ (4.6) BS02 rna ? GO:0000462 ... P0CX51 33326748
    31 7ajt:DW (4.6) BS01 rna ? GO:0002181 ... P0C0W1 33326748
    32 7ajt:DX (4.6) BS01 rna ? GO:0000462 ... P0CX29 33326748
    33 7ajt:DY (4.6) BS01 rna ? GO:0000462 ... P0CX31 33326748
    34 7ajt:Db (4.6) BS01 rna ? GO:0000028 ... P35997 33326748
    35 7ajt:Db (4.6) BS02 ZN ? GO:0000028 ... P35997 33326748
    36 7ajt:Dc (4.6) BS01 rna ? GO:0000028 ... Q3E7X9 33326748
    37 7ajt:EH (4.6) BS01 rna ? GO:0000176 ... Q08285 33326748
    38 7ajt:EN (4.6) BS01 rna 3.6.4.13 GO:0000292 ... P47047 33326748
    39 7ajt:JA (4.6) BS01 rna 2.3.1.- GO:0000049 ... P53914 33326748
    40 7ajt:JC (4.6) BS01 rna ? GO:0000462 ... P48234 33326748
    41 7ajt:JG (4.6) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 33326748
    42 7ajt:JH (4.6) BS01 rna ? GO:0000447 ... P38333 33326748
    43 7ajt:JJ (4.6) BS01 rna ? GO:0000056 ... Q99216 33326748
    44 7ajt:JK (4.6) BS01 rna ? GO:0000462 ... Q06631 33326748
    45 7ajt:JM (4.6) BS01 rna ? GO:0000447 ... Q12035 33326748
    46 7ajt:JM (4.6) BS02 rna ? GO:0000447 ... Q12035 33326748
    47 7ajt:JN (4.6) BS01 rna ? GO:0000462 ... P40546 33326748
    48 7ajt:JN (4.6) BS02 rna ? GO:0000462 ... P40546 33326748
    49 7ajt:JO (4.6) BS01 rna ? GO:0000447 ... P25586 33326748
    50 7ajt:JP (4.6) BS01 rna ? GO:0000462 ... P33750 33326748
    51 7ajt:JP (4.6) BS02 rna ? GO:0000462 ... P33750 33326748
    52 7ajt:JP (4.6) BS03 rna ? GO:0000462 ... P33750 33326748
    53 7ajt:JQ (4.6) BS01 rna ? GO:0003674 ... P40470 33326748
    54 7ajt:UA (4.6) BS01 rna ? GO:0000028 ... P25635 33326748
    55 7ajt:UA (4.6) BS02 rna ? GO:0000028 ... P25635 33326748
    56 7ajt:UA (4.6) BS03 rna ? GO:0000028 ... P25635 33326748
    57 7ajt:UB (4.6) BS01 rna ? GO:0000028 ... Q99207 33326748
    58 7ajt:UB (4.6) BS02 rna ? GO:0000028 ... Q99207 33326748
    59 7ajt:UC (4.6) BS01 rna ? GO:0000447 ... Q12136 33326748
    60 7ajt:UD (4.6) BS01 rna ? GO:0000462 ... Q06679 33326748
    61 7ajt:UE (4.6) BS01 rna ? GO:0000462 ... Q04177 33326748
    62 7ajt:UF (4.6) BS01 rna ? GO:0000447 ... Q02354 33326748
    63 7ajt:UG (4.6) BS01 rna ? GO:0000447 ... P40055 33326748
    64 7ajt:UG (4.6) BS02 rna ? GO:0000447 ... P40055 33326748
    65 7ajt:UG (4.6) BS03 rna ? GO:0000447 ... P40055 33326748
    66 7ajt:UJ (4.6) BS01 rna ? GO:0000447 ... P42945 33326748
    67 7ajt:UK (4.6) BS01 rna ? GO:0000447 ... P34247 33326748
    68 7ajt:UK (4.6) BS02 rna ? GO:0000447 ... P34247 33326748
    69 7ajt:UK (4.6) BS03 rna ? GO:0000447 ... P34247 33326748
    70 7ajt:UL (4.6) BS01 rna ? GO:0000447 ... Q12220 33326748
    71 7ajt:UM (4.6) BS01 rna ? GO:0000447 ... Q05946 33326748
    72 7ajt:UN (4.6) BS01 rna ? GO:0000447 ... Q04500 33326748
    73 7ajt:UN (4.6) BS02 rna ? GO:0000447 ... Q04500 33326748
    74 7ajt:UO (4.6) BS01 rna ? GO:0000462 ... Q04305 33326748
    75 7ajt:UO (4.6) BS02 rna ? GO:0000462 ... Q04305 33326748
    76 7ajt:UP (4.6) BS01 rna ? GO:0000447 ... Q08492 33326748
    77 7ajt:UQ (4.6) BS01 rna ? GO:0000462 ... Q02931 33326748
    78 7ajt:UQ (4.6) BS02 rna ? GO:0000462 ... Q02931 33326748
    79 7ajt:UR (4.6) BS01 rna ? GO:0000292 ... P40362 33326748
    80 7ajt:UR (4.6) BS02 rna ? GO:0000292 ... P40362 33326748
    81 7ajt:US (4.6) BS01 rna ? GO:0000028 ... Q06512 33326748
    82 7ajt:UT (4.6) BS01 rna ? GO:0000447 ... P35194 33326748
    83 7ajt:UU (4.6) BS01 rna ? GO:0003674 ... Q06078 33326748
    84 7ajt:UU (4.6) BS02 rna ? GO:0003674 ... Q06078 33326748
    85 7ajt:UV (4.6) BS01 rna ? GO:0000028 ... P53254 33326748
    86 7ajt:UX (4.6) BS01 rna ? GO:0000447 ... Q05498 33326748
    87 7ajt:UX (4.6) BS02 rna ? GO:0000447 ... Q05498 33326748
    88 7ajt:UX (4.6) BS03 ZN ? GO:0000447 ... Q05498 33326748
    89 7ajt:UZ (4.6) BS01 rna ? GO:0000462 ... P36144 33326748
    90 7ajt:UZ (4.6) BS02 rna ? GO:0000462 ... P36144 33326748
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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