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BioLiP
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7abg:A (7.8) BS01 rna ? GO:0000244 ... Q6P2Q9 33243851
    2 7abg:A (7.8) BS02 rna ? GO:0000244 ... Q6P2Q9 33243851
    3 7abg:A (7.8) BS03 rna ? GO:0000244 ... Q6P2Q9 33243851
    4 7abg:A1 (7.8) BS01 GTG ? GO:0000184 ... P52298 33243851
    5 7abg:A6 (7.8) BS01 GTG ? GO:0000380 ... Q07955 33243851
    6 7abg:B (7.8) BS01 rna ? GO:0000398 ... P08579 33243851
    7 7abg:D (7.8) BS01 rna ? GO:0000375 ... Q96DI7 33243851
    8 7abg:F (7.8) BS01 rna ? GO:0000245 ... Q15428 33243851
    9 7abg:K (7.8) BS01 rna ? GO:0000398 ... P55081 33243851
    10 7abg:K (7.8) BS02 rna ? GO:0000398 ... P55081 33243851
    11 7abg:N (7.8) BS01 rna ? GO:0000398 ... Q96NC0 33243851
    12 7abg:N (7.8) BS02 rna ? GO:0000398 ... Q96NC0 33243851
    13 7abg:P (7.8) BS01 rna ? GO:0000398 ... Q9NW64 33243851
    14 7abg:P (7.8) BS02 rna ? GO:0000398 ... Q9NW64 33243851
    15 7abg:Q (7.8) BS01 rna ? GO:0000398 ... P41223 33243851
    16 7abg:W (7.8) BS01 rna ? GO:0000398 ... P09661 33243851
    17 7abg:a (7.8) BS01 rna ? GO:0000245 ... P62316 33243851
    18 7abg:b (7.8) BS01 rna ? GO:0000387 ... P62306 33243851
    19 7abg:e (7.8) BS01 rna ? GO:0000243 ... P62318 33243851
    20 7abg:f (7.8) BS01 rna ? GO:0000387 ... P14678 33243851
    21 7abg:g (7.8) BS01 rna ? GO:0000243 ... P62314 33243851
    22 7abg:h (7.8) BS01 rna ? GO:0000245 ... P62316 33243851
    23 7abg:j (7.8) BS01 rna ? GO:0000245 ... P62304 33243851
    24 7abg:k (7.8) BS01 rna ? GO:0000245 ... P62308 33243851
    25 7abg:l (7.8) BS01 rna ? GO:0000243 ... P62318 33243851
    26 7abg:m (7.8) BS01 rna ? GO:0000387 ... P14678 33243851
    27 7abg:n (7.8) BS01 rna ? GO:0000243 ... P62314 33243851
    28 7abg:r (7.8) BS01 GTP ? GO:0000398 ... Q15029 33243851
    29 7abg:u (7.8) BS01 rna ? GO:0000245 ... O75533 33243851
    30 7abg:u (7.8) BS02 rna ? GO:0000245 ... O75533 33243851
    31 7abg:y (7.8) BS01 rna ? GO:0000398 ... Q7RTV0 33243851
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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