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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7a5p:E (5.0) BS01 rna ? GO:0000398 ... O60508 33007253
    2 7a5p:P (5.0) BS01 rna ? GO:0000398 ... Q9NW64 33007253
    3 7a5p:U (5.0) BS01 rna 3.6.4.13 GO:0000398 ... O60306 33007253
    4 7a5p:X (5.0) BS01 rna ? GO:0000398 ... P08579 33007253
    5 7a5p:a (5.0) BS01 rna ? GO:0000243 ... P62318 33007253
    6 7a5p:b (5.0) BS01 rna ? GO:0000387 ... P14678 33007253
    7 7a5p:e (5.0) BS01 rna ? GO:0000245 ... P62304 33007253
    8 7a5p:g (5.0) BS01 rna ? GO:0000245 ... P62308 33007253
    9 7a5p:h (5.0) BS01 rna ? GO:0000245 ... P62316 33007253
    10 7a5p:j (5.0) BS01 rna ? GO:0000245 ... P62304 33007253
    11 7a5p:k (5.0) BS01 rna ? GO:0000245 ... P62308 33007253
    12 7a5p:l (5.0) BS01 rna ? GO:0000243 ... P62318 33007253
    13 7a5p:m (5.0) BS01 rna ? GO:0000387 ... P14678 33007253
    14 7a5p:n (5.0) BS01 rna ? GO:0000243 ... P62314 33007253
    15 7a5p:p (5.0) BS01 rna ? GO:0005634 ... Q9NW82 33007253
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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