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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zxe:A (3.0) BS01 rna ? GO:0000028 ... P08865 33208940
    2 6zxe:B (3.0) BS01 rna ? GO:0002181 ... P61247 33208940
    3 6zxe:C (3.0) BS01 rna ? GO:0002181 ... P15880 33208940
    4 6zxe:D (3.0) BS01 rna 4.2.99.18 GO:0000977 ... P23396 33208940
    5 6zxe:E (3.0) BS01 rna ? GO:0002181 ... P62701 33208940
    6 6zxe:F (3.0) BS01 rna ? GO:0000028 ... P46782 33208940
    7 6zxe:G (3.0) BS01 rna ? GO:0000082 ... P62753 33208940
    8 6zxe:H (3.0) BS01 rna ? GO:0001843 ... P62081 33208940
    9 6zxe:I (3.0) BS01 rna ? GO:0000462 ... P62241 33208940
    10 6zxe:J (3.0) BS01 rna ? GO:0002181 ... P46781 33208940
    11 6zxe:K (3.0) BS01 rna ? GO:0002181 ... P46783 33208940
    12 6zxe:L (3.0) BS01 rna ? GO:0002181 ... P62280 33208940
    13 6zxe:M (3.0) BS01 rna ? GO:0002181 ... P25398 33208940
    14 6zxe:N (3.0) BS01 rna ? GO:0002181 ... P62277 33208940
    15 6zxe:O (3.0) BS01 rna ? GO:0000028 ... P62263 33208940
    16 6zxe:P (3.0) BS01 rna ? GO:0000028 ... P62841 33208940
    17 6zxe:Q (3.0) BS01 rna ? GO:0000462 ... P62249 33208940
    18 6zxe:R (3.0) BS01 rna ? GO:0002181 ... P08708 33208940
    19 6zxe:S (3.0) BS01 rna ? GO:0002181 ... P62269 33208940
    20 6zxe:T (3.0) BS01 rna ? GO:0000028 ... P39019 33208940
    21 6zxe:U (3.0) BS01 rna ? GO:0002181 ... P60866 33208940
    22 6zxe:W (3.0) BS01 rna ? GO:0002181 ... P62244 33208940
    23 6zxe:X (3.0) BS01 rna ? GO:0002181 ... P62266 33208940
    24 6zxe:Y (3.0) BS01 rna ? GO:0002181 ... P62847 33208940
    25 6zxe:Z (3.0) BS01 rna ? GO:0002181 ... P62851 33208940
    26 6zxe:b (3.0) BS01 rna ? GO:0000028 ... P42677 33208940
    27 6zxe:c (3.0) BS01 rna ? GO:0000028 ... P62857 33208940
    28 6zxe:d (3.0) BS01 rna ? GO:0002181 ... P62273 33208940
    29 6zxe:e (3.0) BS01 rna ? GO:0003735 ... P62861 33208940
    30 6zxe:f (3.0) BS01 rna ? GO:0002181 ... P62979 33208940
    31 6zxe:g (3.0) BS01 rna ? GO:0001891 ... P63244 33208940
    32 6zxe:k (3.0) BS01 rna ? GO:0003723 ... Q8N1G4 33208940
    33 6zxe:x (3.0) BS01 rna ? GO:0003676 ... Q9NRX1 33208940
    34 6zxe:y (3.0) BS01 rna 3.1.-.- GO:0004519 ... Q9ULX3 33208940
    35 6zxe:y (3.0) BS02 ZN 3.1.-.- GO:0004519 ... Q9ULX3 33208940
    36 6zxe:z (3.0) BS01 rna 2.7.11.1
    3.6.3.-    		 GO:0004674 ... Q9BRS2 33208940
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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