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BioLiP
Download all results in tab-seperated text for 84 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zxa:A (2.38) BS01 BCL ? N/A W0E6A1 33579696
    2 6zxa:A (2.38) BS02 QS2 ? N/A W0E6A1 33579696
    3 6zxa:A (2.38) BS03 BCL ? N/A W0E6A1 33579696
    4 6zxa:A (2.38) BS04 BCL ? N/A W0E6A1 33579696
    5 6zxa:A (2.38) BS05 QSE ? N/A W0E6A1 33579696
    6 6zxa:A (2.38) BS06 QSE ? N/A W0E6A1 33579696
    7 6zxa:A (2.38) BS07 QSE ? N/A W0E6A1 33579696
    8 6zxa:B (2.38) BS01 BCL ? GO:0005886 ... W0E5B0 33579696
    9 6zxa:B (2.38) BS02 BCL ? GO:0005886 ... W0E5B0 33579696
    10 6zxa:B (2.38) BS03 BCL ? GO:0005886 ... W0E5B0 33579696
    11 6zxa:B (2.38) BS04 QS2 ? GO:0005886 ... W0E5B0 33579696
    12 6zxa:B (2.38) BS05 QSE ? GO:0005886 ... W0E5B0 33579696
    13 6zxa:C (2.38) BS01 QS2 ? N/A W0E6A1 33579696
    14 6zxa:C (2.38) BS02 QSE ? N/A W0E6A1 33579696
    15 6zxa:C (2.38) BS03 BCL ? N/A W0E6A1 33579696
    16 6zxa:C (2.38) BS04 BCL ? N/A W0E6A1 33579696
    17 6zxa:C (2.38) BS05 BCL ? N/A W0E6A1 33579696
    18 6zxa:C (2.38) BS06 QSE ? N/A W0E6A1 33579696
    19 6zxa:C (2.38) BS07 QSE ? N/A W0E6A1 33579696
    20 6zxa:D (2.38) BS01 BCL ? GO:0005886 ... W0E5B0 33579696
    21 6zxa:D (2.38) BS02 BCL ? GO:0005886 ... W0E5B0 33579696
    22 6zxa:D (2.38) BS03 BCL ? GO:0005886 ... W0E5B0 33579696
    23 6zxa:D (2.38) BS04 QSE ? GO:0005886 ... W0E5B0 33579696
    24 6zxa:D (2.38) BS05 QS2 ? GO:0005886 ... W0E5B0 33579696
    25 6zxa:E (2.38) BS01 QSE ? N/A W0E6A1 33579696
    26 6zxa:E (2.38) BS02 BCL ? N/A W0E6A1 33579696
    27 6zxa:E (2.38) BS03 QS2 ? N/A W0E6A1 33579696
    28 6zxa:E (2.38) BS04 QSE ? N/A W0E6A1 33579696
    29 6zxa:E (2.38) BS05 BCL ? N/A W0E6A1 33579696
    30 6zxa:E (2.38) BS06 BCL ? N/A W0E6A1 33579696
    31 6zxa:E (2.38) BS07 QSE ? N/A W0E6A1 33579696
    32 6zxa:F (2.38) BS01 BCL ? GO:0005886 ... W0E5B0 33579696
    33 6zxa:F (2.38) BS02 QSE ? GO:0005886 ... W0E5B0 33579696
    34 6zxa:F (2.38) BS03 BCL ? GO:0005886 ... W0E5B0 33579696
    35 6zxa:F (2.38) BS04 BCL ? GO:0005886 ... W0E5B0 33579696
    36 6zxa:F (2.38) BS05 QS2 ? GO:0005886 ... W0E5B0 33579696
    37 6zxa:G (2.38) BS01 QSE ? N/A W0E6A1 33579696
    38 6zxa:G (2.38) BS02 BCL ? N/A W0E6A1 33579696
    39 6zxa:G (2.38) BS03 QS2 ? N/A W0E6A1 33579696
    40 6zxa:G (2.38) BS04 QSE ? N/A W0E6A1 33579696
    41 6zxa:G (2.38) BS05 BCL ? N/A W0E6A1 33579696
    42 6zxa:G (2.38) BS06 BCL ? N/A W0E6A1 33579696
    43 6zxa:G (2.38) BS07 QSE ? N/A W0E6A1 33579696
    44 6zxa:H (2.38) BS01 BCL ? GO:0005886 ... W0E5B0 33579696
    45 6zxa:H (2.38) BS02 QSE ? GO:0005886 ... W0E5B0 33579696
    46 6zxa:H (2.38) BS03 BCL ? GO:0005886 ... W0E5B0 33579696
    47 6zxa:H (2.38) BS04 BCL ? GO:0005886 ... W0E5B0 33579696
    48 6zxa:H (2.38) BS05 QS2 ? GO:0005886 ... W0E5B0 33579696
    49 6zxa:I (2.38) BS01 QSE ? N/A W0E6A1 33579696
    50 6zxa:I (2.38) BS02 BCL ? N/A W0E6A1 33579696
    51 6zxa:I (2.38) BS03 QS2 ? N/A W0E6A1 33579696
    52 6zxa:I (2.38) BS04 QSE ? N/A W0E6A1 33579696
    53 6zxa:I (2.38) BS05 BCL ? N/A W0E6A1 33579696
    54 6zxa:I (2.38) BS06 BCL ? N/A W0E6A1 33579696
    55 6zxa:I (2.38) BS07 QSE ? N/A W0E6A1 33579696
    56 6zxa:J (2.38) BS01 BCL ? GO:0005886 ... W0E5B0 33579696
    57 6zxa:J (2.38) BS02 QSE ? GO:0005886 ... W0E5B0 33579696
    58 6zxa:J (2.38) BS03 BCL ? GO:0005886 ... W0E5B0 33579696
    59 6zxa:J (2.38) BS04 BCL ? GO:0005886 ... W0E5B0 33579696
    60 6zxa:J (2.38) BS05 QS2 ? GO:0005886 ... W0E5B0 33579696
    61 6zxa:K (2.38) BS01 QSE ? N/A W0E6A1 33579696
    62 6zxa:K (2.38) BS02 BCL ? N/A W0E6A1 33579696
    63 6zxa:K (2.38) BS03 QS2 ? N/A W0E6A1 33579696
    64 6zxa:K (2.38) BS04 BCL ? N/A W0E6A1 33579696
    65 6zxa:K (2.38) BS05 BCL ? N/A W0E6A1 33579696
    66 6zxa:K (2.38) BS06 QSE ? N/A W0E6A1 33579696
    67 6zxa:K (2.38) BS07 QSE ? N/A W0E6A1 33579696
    68 6zxa:L (2.38) BS01 BCL ? GO:0005886 ... W0E5B0 33579696
    69 6zxa:L (2.38) BS02 BCL ? GO:0005886 ... W0E5B0 33579696
    70 6zxa:L (2.38) BS03 BCL ? GO:0005886 ... W0E5B0 33579696
    71 6zxa:L (2.38) BS04 QSE ? GO:0005886 ... W0E5B0 33579696
    72 6zxa:L (2.38) BS05 QS2 ? GO:0005886 ... W0E5B0 33579696
    73 6zxa:M (2.38) BS01 QSE ? N/A W0E6A1 33579696
    74 6zxa:M (2.38) BS02 QSE ? N/A W0E6A1 33579696
    75 6zxa:M (2.38) BS03 BCL ? N/A W0E6A1 33579696
    76 6zxa:M (2.38) BS04 QS2 ? N/A W0E6A1 33579696
    77 6zxa:M (2.38) BS05 QSE ? N/A W0E6A1 33579696
    78 6zxa:M (2.38) BS06 BCL ? N/A W0E6A1 33579696
    79 6zxa:M (2.38) BS07 BCL ? N/A W0E6A1 33579696
    80 6zxa:N (2.38) BS01 QS2 ? GO:0005886 ... W0E5B0 33579696
    81 6zxa:N (2.38) BS02 BCL ? GO:0005886 ... W0E5B0 33579696
    82 6zxa:N (2.38) BS03 QSE ? GO:0005886 ... W0E5B0 33579696
    83 6zxa:N (2.38) BS04 BCL ? GO:0005886 ... W0E5B0 33579696
    84 6zxa:N (2.38) BS05 BCL ? GO:0005886 ... W0E5B0 33579696
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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