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BioLiP
Download all results in tab-seperated text for 107 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zvk:12 (3.49) BS01 rna ? GO:0002181 ... G1T0C1 33296660
    2 6zvk:12 (3.49) BS02 rna ? GO:0002181 ... G1T0C1 33296660
    3 6zvk:13 (3.49) BS01 rna ? GO:0003723 ... G1TDL2 33296660
    4 6zvk:22 (3.49) BS01 rna ? GO:0003735 ... G1TXF6 33296660
    5 6zvk:32 (3.49) BS01 rna ? GO:0003723 ... Q3T0W9 33296660
    6 6zvk:32 (3.49) BS02 rna ? GO:0003723 ... Q3T0W9 33296660
    7 6zvk:42 (3.49) BS01 rna ? GO:0000470 ... G1SKZ8 33296660
    8 6zvk:42 (3.49) BS02 rna ? GO:0000470 ... G1SKZ8 33296660
    9 6zvk:52 (3.49) BS01 rna ? GO:0003723 ... G1TL06 33296660
    10 6zvk:62 (3.49) BS01 rna ? GO:0003735 ... Q3T003 33296660
    11 6zvk:62 (3.49) BS02 rna ? GO:0003735 ... Q3T003 33296660
    12 6zvk:72 (3.49) BS01 rna ? GO:0003735 ... G1SHQ2 33296660
    13 6zvk:72 (3.49) BS02 rna ? GO:0003735 ... G1SHQ2 33296660
    14 6zvk:82 (3.49) BS01 rna ? GO:0003735 ... G1TSG1 33296660
    15 6zvk:92 (3.49) BS01 rna ? GO:0002181 ... G1TT27 33296660
    16 6zvk:A2 (3.49) BS01 rna ? GO:0000463 ... G1SIT5 33296660
    17 6zvk:A2 (3.49) BS02 rna ? GO:0000463 ... G1SIT5 33296660
    18 6zvk:A3 (3.49) BS01 rna ? GO:0003723 ... G1U0Q2 33296660
    19 6zvk:A3 (3.49) BS02 rna ? GO:0003723 ... G1U0Q2 33296660
    20 6zvk:B2 (3.49) BS01 rna ? GO:0002181 ... G1TTQ5 33296660
    21 6zvk:B3 (3.49) BS01 rna ? GO:0000462 ... G1SGX4 33296660
    22 6zvk:C2 (3.49) BS01 rna ? GO:0003735 ... U3KPD5 33296660
    23 6zvk:C2 (3.49) BS02 rna ? GO:0003735 ... U3KPD5 33296660
    24 6zvk:C2 (3.49) BS03 ZN ? GO:0003735 ... U3KPD5 33296660
    25 6zvk:C3 (3.49) BS01 rna ? GO:0003735 ... G1TU13 33296660
    26 6zvk:D2 (3.49) BS01 rna ? GO:0003735 ... G1SYU7 33296660
    27 6zvk:D2 (3.49) BS02 rna ? GO:0003735 ... G1SYU7 33296660
    28 6zvk:E2 (3.49) BS01 rna ? GO:0003735 ... P63048 33296660
    29 6zvk:E2 (3.49) BS02 ZN ? GO:0003735 ... P63048 33296660
    30 6zvk:E3 (3.49) BS01 rna ? N/A G1T168 33296660
    31 6zvk:F2 (3.49) BS01 rna ? GO:0003735 ... G1T040 33296660
    32 6zvk:F2 (3.49) BS02 ZN ? GO:0003735 ... G1T040 33296660
    33 6zvk:F3 (3.49) BS01 rna ? GO:0003735 ... G1SP51 33296660
    34 6zvk:G2 (3.49) BS01 rna ? GO:0000027 ... P19949 33296660
    35 6zvk:G2 (3.49) BS02 rna ? GO:0000027 ... P19949 33296660
    36 6zvk:G3 (3.49) BS01 rna ? GO:0003735 ... G1TRM4 33296660
    37 6zvk:G5 (3.49) BS01 rna ? GO:0003676 ... G1TPG3 33296660
    38 6zvk:H2 (3.49) BS01 rna ? GO:0003735 ... G1SCJ6 33296660
    39 6zvk:H2 (3.49) BS02 rna ? GO:0003735 ... G1SCJ6 33296660
    40 6zvk:H3 (3.49) BS01 rna ? GO:0003735 ... G1U7M4 33296660
    41 6zvk:H3 (3.49) BS02 ZN ? GO:0003735 ... G1U7M4 33296660
    42 6zvk:H5 (3.49) BS01 rna ? GO:0000028 ... G1TN62 33296660
    43 6zvk:I2 (3.49) BS01 rna ? GO:0003735 ... G1SY53 33296660
    44 6zvk:I2 (3.49) BS02 ZN ? GO:0003735 ... G1SY53 33296660
    45 6zvk:I3 (3.49) BS01 rna ? GO:0003723 ... A0A5F9CX53 33296660
    46 6zvk:I5 (3.49) BS01 rna ? GO:0003735 ... A0A5F9CBF4 33296660
    47 6zvk:J2 (3.49) BS01 rna ? GO:0003735 ... G1U7L1 33296660
    48 6zvk:J5 (3.49) BS01 rna ? GO:0003735 ... G1TG89 33296660
    49 6zvk:K2 (3.49) BS01 rna ? N/A G1SPK4 33296660
    50 6zvk:L2 (3.49) BS01 rna ? GO:0003735 ... B7NZQ2 33296660
    51 6zvk:L2 (3.49) BS02 rna ? GO:0003735 ... B7NZQ2 33296660
    52 6zvk:L3 (3.49) BS01 rna ? GO:0000028 ... G1TZ76 33296660
    53 6zvk:M2 (3.49) BS01 rna ? GO:0003723 ... G1SMR7 33296660
    54 6zvk:M3 (3.49) BS01 rna ? N/A G1TDB3 33296660
    55 6zvk:N3 (3.49) BS01 rna ? GO:0003723 ... U3KMN4 33296660
    56 6zvk:N3 (3.49) BS02 rna ? GO:0003723 ... U3KMN4 33296660
    57 6zvk:O3 (3.49) BS01 rna ? GO:0003735 ... Q56JV1 33296660
    58 6zvk:O3 (3.49) BS02 ZN ? GO:0003735 ... Q56JV1 33296660
    59 6zvk:P3 (3.49) BS01 rna ? GO:0003735 ... A6H769 33296660
    60 6zvk:Q3 (3.49) BS01 rna ? GO:0003735 ... P79781 33296660
    61 6zvk:R2 (3.49) BS01 rna ? GO:0003735 ... G1U1N5 33296660
    62 6zvk:S2 (3.49) BS01 rna ? GO:0002181 ... Q07020 33296660
    63 6zvk:T2 (3.49) BS01 rna ? GO:0003735 ... G1SKF7 33296660
    64 6zvk:T3 (3.49) BS01 rna ? GO:0003735 ... G1SZ47 33296660
    65 6zvk:U2 (3.49) BS01 rna ? GO:0000463 ... G1SV32 33296660
    66 6zvk:U2 (3.49) BS02 rna ? GO:0000463 ... G1SV32 33296660
    67 6zvk:U3 (3.49) BS01 rna ? GO:0003735 ... G1TJH8 33296660
    68 6zvk:V2 (3.49) BS01 rna ? GO:0000470 ... P62424 33296660
    69 6zvk:V2 (3.49) BS02 rna ? GO:0000470 ... P62424 33296660
    70 6zvk:V3 (3.49) BS01 rna ? GO:0003735 ... G1SS70 33296660
    71 6zvk:W2 (3.49) BS01 rna ? GO:0002181 ... G1SWI6 33296660
    72 6zvk:W3 (3.49) BS01 rna N/A GO:0003723 ... N/A 33296660
    73 6zvk:X2 (3.49) BS01 rna ? GO:0003735 ... B7NZQ2 33296660
    74 6zvk:X2 (3.49) BS02 rna ? GO:0003735 ... B7NZQ2 33296660
    75 6zvk:Y2 (3.49) BS01 rna ? GO:0003723 ... G1TUB8 33296660
    76 6zvk:Y2 (3.49) BS02 rna ? GO:0003723 ... G1TUB8 33296660
    77 6zvk:Y3 (3.49) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 33296660
    78 6zvk:Y3 (3.49) BS02 rna 4.2.99.18 GO:0003677 ... G1TNM3 33296660
    79 6zvk:Z2 (3.49) BS01 rna ? GO:0003723 ... G1SZ12 33296660
    80 6zvk:a3 (3.49) BS01 rna ? GO:0001891 ... G1SJB4 33296660
    81 6zvk:a5 (3.49) BS01 rna ? GO:0000028 ... G1T1F0 33296660
    82 6zvk:a5 (3.49) BS02 rna ? GO:0000028 ... G1T1F0 33296660
    83 6zvk:a7 (3.49) BS01 rna N/A GO:0003735 ... N/A 33296660
    84 6zvk:b3 (3.49) BS01 rna ? GO:0000082 ... G1TM55 33296660
    85 6zvk:c3 (3.49) BS01 rna ? GO:0000462 ... G1TJW1 33296660
    86 6zvk:c3 (3.49) BS02 rna ? GO:0000462 ... G1TJW1 33296660
    87 6zvk:d3 (3.49) BS01 rna ? GO:0003723 ... B7NZS8 33296660
    88 6zvk:e3 (3.49) BS01 rna ? GO:0003735 ... G1SFR8 33296660
    89 6zvk:f3 (3.49) BS01 rna ? GO:0000028 ... G1TIB4 33296660
    90 6zvk:j3 (3.49) BS01 rna ? GO:0003723 ... G1TK17 33296660
    91 6zvk:k2 (3.49) BS01 rna ? GO:0000122 ... G1T6D1 33296660
    92 6zvk:l2 (3.49) BS01 rna ? N/A G1SE28 33296660
    93 6zvk:m2 (3.49) BS01 rna ? GO:0003735 ... G1SE76 33296660
    94 6zvk:m2 (3.49) BS02 rna ? GO:0003735 ... G1SE76 33296660
    95 6zvk:o2 (3.49) BS01 rna ? GO:0002181 ... G1SQH0 33296660
    96 6zvk:o2 (3.49) BS02 rna ? GO:0002181 ... G1SQH0 33296660
    97 6zvk:p2 (3.49) BS01 rna ? GO:0003735 ... G1U001 33296660
    98 6zvk:q2 (3.49) BS01 rna ? GO:0003735 ... G1SNY0 33296660
    99 6zvk:r2 (3.49) BS01 rna ? GO:0003735 ... G1SGR6 33296660
    100 6zvk:s3 (3.49) BS01 rna ? GO:0003735 ... P62866 33296660
    101 6zvk:t2 (3.49) BS01 rna ? GO:0003735 ... G1SVW5 33296660
    102 6zvk:t2 (3.49) BS02 rna ? GO:0003735 ... G1SVW5 33296660
    103 6zvk:u2 (3.49) BS01 rna ? GO:0003735 ... G1SHG0 33296660
    104 6zvk:v2 (3.49) BS01 rna ? GO:0003735 ... G1TUN8 33296660
    105 6zvk:w2 (3.49) BS01 rna ? GO:0003729 ... G5B8P1 33296660
    106 6zvk:x2 (3.49) BS01 rna ? GO:0000049 ... G1SF08 33296660
    107 6zvk:y2 (3.49) BS01 rna ? GO:0003735 ... G1TXG5 33296660
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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