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BioLiP
Download all results in tab-seperated text for 77 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ztn:AB (3.9) BS01 rna ? GO:0000028 ... P0A7V0 32820062
    2 6ztn:AC (3.9) BS01 rna ? GO:0000028 ... P0A7V3 32820062
    3 6ztn:AD (3.9) BS01 rna ? GO:0000028 ... P0A7V8 32820062
    4 6ztn:AE (3.9) BS01 rna ? GO:0000028 ... P0A7W1 32820062
    5 6ztn:AE (3.9) BS02 rna ? GO:0000028 ... P0A7W1 32820062
    6 6ztn:AF (3.9) BS01 rna ? GO:0002181 ... P02358 32820062
    7 6ztn:AG (3.9) BS01 rna ? GO:0003723 ... P02359 32820062
    8 6ztn:AG (3.9) BS02 rna ? GO:0003723 ... P02359 32820062
    9 6ztn:AH (3.9) BS01 rna ? GO:0000028 ... P0A7W7 32820062
    10 6ztn:AI (3.9) BS01 rna ? GO:0000049 ... P0A7X3 32820062
    11 6ztn:AI (3.9) BS02 rna ? GO:0000049 ... P0A7X3 32820062
    12 6ztn:AJ (3.9) BS01 rna ? GO:0000049 ... P0A7R5 32820062
    13 6ztn:AK (3.9) BS01 rna ? GO:0002181 ... P0A7R9 32820062
    14 6ztn:AL (3.9) BS01 rna ? GO:0000049 ... P0A7S3 32820062
    15 6ztn:AL (3.9) BS02 MG ? GO:0000049 ... P0A7S3 32820062
    16 6ztn:AM (3.9) BS01 rna ? GO:0000049 ... P0A7S9 32820062
    17 6ztn:AM (3.9) BS02 rna ? GO:0000049 ... P0A7S9 32820062
    18 6ztn:AN (3.9) BS01 rna ? GO:0000028 ... P0AG59 32820062
    19 6ztn:AO (3.9) BS01 rna ? GO:0000028 ... P0ADZ4 32820062
    20 6ztn:AO (3.9) BS02 rna ? GO:0000028 ... P0ADZ4 32820062
    21 6ztn:AP (3.9) BS01 rna ? GO:0000028 ... P0A7T3 32820062
    22 6ztn:AQ (3.9) BS01 rna ? GO:0000028 ... P0AG63 32820062
    23 6ztn:AR (3.9) BS01 rna ? GO:0002181 ... P0A7T7 32820062
    24 6ztn:AS (3.9) BS01 rna ? GO:0000028 ... P0A7U3 32820062
    25 6ztn:AT (3.9) BS01 rna ? GO:0000028 ... P0A7U7 32820062
    26 6ztn:AU (3.9) BS01 rna ? GO:0000028 ... P68679 32820062
    27 6ztn:B1 (3.9) BS01 rna ? GO:0000027 ... P0AG51 32820062
    28 6ztn:B2 (3.9) BS01 rna ? GO:0000027 ... P0A7N4 32820062
    29 6ztn:B3 (3.9) BS01 rna ? GO:0000027 ... P0A7N9 32820062
    30 6ztn:B4 (3.9) BS01 rna ? GO:0002181 ... P0A7P5 32820062
    31 6ztn:B5 (3.9) BS01 rna ? GO:0002181 ... P0A7Q1 32820062
    32 6ztn:B6 (3.9) BS01 rna ? GO:0002181 ... P0A7Q6 32820062
    33 6ztn:BC (3.9) BS01 rna ? GO:0000027 ... P60422 32820062
    34 6ztn:BC (3.9) BS02 MG ? GO:0000027 ... P60422 32820062
    35 6ztn:BC (3.9) BS03 MG ? GO:0000027 ... P60422 32820062
    36 6ztn:BD (3.9) BS01 rna ? GO:0000027 ... P60438 32820062
    37 6ztn:BE (3.9) BS01 rna ? GO:0001070 ... P60723 32820062
    38 6ztn:BF (3.9) BS01 rna ? GO:0000027 ... P62399 32820062
    39 6ztn:BF (3.9) BS02 rna ? GO:0000027 ... P62399 32820062
    40 6ztn:BF (3.9) BS03 rna ? GO:0000027 ... P62399 32820062
    41 6ztn:BG (3.9) BS01 rna ? GO:0000027 ... P0AG55 32820062
    42 6ztn:BH (3.9) BS01 rna ? GO:0002181 ... P0A7R1 32820062
    43 6ztn:BK (3.9) BS01 rna ? GO:0002181 ... P0AA10 32820062
    44 6ztn:BL (3.9) BS01 rna ? GO:0002181 ... P0ADY3 32820062
    45 6ztn:BL (3.9) BS02 rna ? GO:0002181 ... P0ADY3 32820062
    46 6ztn:BM (3.9) BS01 rna ? GO:0002181 ... P02413 32820062
    47 6ztn:BN (3.9) BS01 rna ? GO:0000027 ... P0ADY7 32820062
    48 6ztn:BN (3.9) BS02 rna ? GO:0000027 ... P0ADY7 32820062
    49 6ztn:BN (3.9) BS03 MG ? GO:0000027 ... P0ADY7 32820062
    50 6ztn:BO (3.9) BS01 rna ? GO:0000027 ... P0AG44 32820062
    51 6ztn:BP (3.9) BS01 rna ? GO:0002181 ... P0C018 32820062
    52 6ztn:BP (3.9) BS02 rna ? GO:0002181 ... P0C018 32820062
    53 6ztn:BQ (3.9) BS01 rna ? GO:0000027 ... P0A7K6 32820062
    54 6ztn:BQ (3.9) BS02 rna ? GO:0000027 ... P0A7K6 32820062
    55 6ztn:BR (3.9) BS01 rna ? GO:0000027 ... P0A7L3 32820062
    56 6ztn:BR (3.9) BS02 MG ? GO:0000027 ... P0A7L3 32820062
    57 6ztn:BS (3.9) BS01 rna ? GO:0002181 ... P0AG48 32820062
    58 6ztn:BT (3.9) BS01 rna ? GO:0002181 ... P61175 32820062
    59 6ztn:BU (3.9) BS01 rna ? GO:0000027 ... P0ADZ0 32820062
    60 6ztn:BV (3.9) BS01 rna ? GO:0000027 ... P60624 32820062
    61 6ztn:BW (3.9) BS01 rna ? GO:0000027 ... P68919 32820062
    62 6ztn:BW (3.9) BS02 rna ? GO:0000027 ... P68919 32820062
    63 6ztn:BX (3.9) BS01 rna ? GO:0000027 ... P0A7L8 32820062
    64 6ztn:BX (3.9) BS02 rna ? GO:0000027 ... P0A7L8 32820062
    65 6ztn:BX (3.9) BS03 MG ? GO:0000027 ... P0A7L8 32820062
    66 6ztn:BY (3.9) BS01 rna ? GO:0000027 ... P0A7M2 32820062
    67 6ztn:BZ (3.9) BS01 rna ? GO:0000027 ... P0A7M6 32820062
    68 6ztn:CC (3.9) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820062
    69 6ztn:CC (3.9) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820062
    70 6ztn:CC (3.9) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820062
    71 6ztn:CD (3.9) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820062
    72 6ztn:CD (3.9) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820062
    73 6ztn:CD (3.9) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820062
    74 6ztn:CD (3.9) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820062
    75 6ztn:CD (3.9) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820062
    76 6ztn:CF (3.9) BS01 dna ? GO:0005515 ... P0AFG0 32820062
    77 6ztn:CF (3.9) BS02 dna ? GO:0005515 ... P0AFG0 32820062
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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