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BioLiP
Download all results in tab-seperated text for 89 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zsc:0 (3.5) BS01 rna ? GO:0003723 ... Q9BYC8 32812867
    2 6zsc:0 (3.5) BS02 ZN ? GO:0003723 ... Q9BYC8 32812867
    3 6zsc:1 (3.5) BS01 rna ? GO:0003735 ... O75394 32812867
    4 6zsc:2 (3.5) BS01 rna ? GO:0003735 ... Q9BQ48 32812867
    5 6zsc:3 (3.5) BS01 rna ? GO:0003735 ... Q9NZE8 32812867
    6 6zsc:4 (3.5) BS01 rna ? GO:0003735 ... Q9P0J6 32812867
    7 6zsc:4 (3.5) BS02 ZN ? GO:0003735 ... Q9P0J6 32812867
    8 6zsc:5 (3.5) BS01 rna ? GO:0003723 ... Q9BZE1 32812867
    9 6zsc:6 (3.5) BS01 rna ? GO:0005515 ... Q96DV4 32812867
    10 6zsc:6 (3.5) BS02 rna ? GO:0005515 ... Q96DV4 32812867
    11 6zsc:8 (3.5) BS01 rna ? GO:0003723 ... Q9NQ50 32812867
    12 6zsc:9 (3.5) BS01 rna ? GO:0003723 ... Q8IXM3 32812867
    13 6zsc:A0 (3.5) BS01 rna ? GO:0003735 ... P82930 32812867
    14 6zsc:A2 (3.5) BS01 rna ? GO:0001650 ... Q96BP2 32812867
    15 6zsc:A3 (3.5) BS01 rna ? GO:0005515 ... Q9NWT8 32812867
    16 6zsc:AB (3.5) BS01 rna ? GO:0003735 ... Q9Y399 32812867
    17 6zsc:AB (3.5) BS02 ZN ? GO:0003735 ... Q9Y399 32812867
    18 6zsc:AC (3.5) BS01 rna ? GO:0003723 ... Q96EL2 32812867
    19 6zsc:AD (3.5) BS01 rna ? GO:0003723 ... P82675 32812867
    20 6zsc:AE (3.5) BS01 rna ? GO:0003735 ... P82932 32812867
    21 6zsc:AF (3.5) BS01 rna ? GO:0000028 ... Q9Y2R9 32812867
    22 6zsc:AF (3.5) BS02 rna ? GO:0000028 ... Q9Y2R9 32812867
    23 6zsc:AG (3.5) BS01 rna ? GO:0003723 ... P82933 32812867
    24 6zsc:AH (3.5) BS01 rna ? GO:0003674 ... P82664 32812867
    25 6zsc:AI (3.5) BS01 rna ? GO:0003723 ... P82912 32812867
    26 6zsc:AJ (3.5) BS01 rna ? GO:0003723 ... O15235 32812867
    27 6zsc:AK (3.5) BS01 rna ? GO:0003723 ... O60783 32812867
    28 6zsc:AL (3.5) BS01 rna ? GO:0003723 ... P82914 32812867
    29 6zsc:AM (3.5) BS01 rna ? GO:0003735 ... Q9Y3D3 32812867
    30 6zsc:AN (3.5) BS01 rna ? GO:0003735 ... Q9Y2R5 32812867
    31 6zsc:AO (3.5) BS01 rna ? GO:0003735 ... Q9Y676 32812867
    32 6zsc:AO (3.5) BS02 ZN ? GO:0003735 ... Q9Y676 32812867
    33 6zsc:AP (3.5) BS01 rna ? GO:0003735 ... Q9Y3D5 32812867
    34 6zsc:AP (3.5) BS02 ZN ? GO:0003735 ... Q9Y3D5 32812867
    35 6zsc:AQ (3.5) BS01 rna ? GO:0003723 ... P82921 32812867
    36 6zsc:AS (3.5) BS01 rna ? GO:0003723 ... Q9Y3D9 32812867
    37 6zsc:AT (3.5) BS01 rna ? GO:0003735 ... P82663 32812867
    38 6zsc:AT (3.5) BS02 ZN ? GO:0003735 ... P82663 32812867
    39 6zsc:AU (3.5) BS01 rna ? GO:0003723 ... Q9BYN8 32812867
    40 6zsc:AV (3.5) BS01 rna ? GO:0000049 ... Q92552 32812867
    41 6zsc:AX (3.5) BS01 rna ? GO:0003723 ... P51398 32812867
    42 6zsc:AX (3.5) BS02 GTP ? GO:0003723 ... P51398 32812867
    43 6zsc:AZ (3.5) BS01 rna ? GO:0003735 ... Q9Y291 32812867
    44 6zsc:XD (3.5) BS01 rna ? GO:0003723 ... Q5T653 32812867
    45 6zsc:XE (3.5) BS01 rna ? GO:0003723 ... P09001 32812867
    46 6zsc:XF (3.5) BS01 rna ? GO:0003723 ... Q9BYD3 32812867
    47 6zsc:XH (3.5) BS01 rna ? GO:0003723 ... Q9BYD2 32812867
    48 6zsc:XI (3.5) BS01 rna ? GO:0003723 ... Q7Z7H8 32812867
    49 6zsc:XI (3.5) BS02 peptide ? GO:0003723 ... Q7Z7H8 32812867
    50 6zsc:XI (3.5) BS03 peptide ? GO:0003723 ... Q7Z7H8 32812867
    51 6zsc:XI (3.5) BS04 peptide ? GO:0003723 ... Q7Z7H8 32812867
    52 6zsc:XJ (3.5) BS01 rna ? GO:0003723 ... Q9Y3B7 32812867
    53 6zsc:XK (3.5) BS01 rna ? GO:0003723 ... Q9BYD1 32812867
    54 6zsc:XL (3.5) BS01 rna ? GO:0003723 ... Q6P1L8 32812867
    55 6zsc:XM (3.5) BS01 rna ? GO:0003723 ... Q9P015 32812867
    56 6zsc:XM (3.5) BS02 MG ? GO:0003723 ... Q9P015 32812867
    57 6zsc:XN (3.5) BS01 rna ? GO:0003735 ... Q9NX20 32812867
    58 6zsc:XO (3.5) BS01 rna ? GO:0003735 ... Q9NRX2 32812867
    59 6zsc:XP (3.5) BS01 rna ? GO:0003723 ... Q9H0U6 32812867
    60 6zsc:XP (3.5) BS02 rna ? GO:0003723 ... Q9H0U6 32812867
    61 6zsc:XQ (3.5) BS01 rna ? GO:0003735 ... P49406 32812867
    62 6zsc:XR (3.5) BS01 rna ? GO:0003723 ... Q9BYC9 32812867
    63 6zsc:XS (3.5) BS01 rna ? GO:0003723 ... Q7Z2W9 32812867
    64 6zsc:XT (3.5) BS01 rna ? GO:0003723 ... Q9NWU5 32812867
    65 6zsc:XU (3.5) BS01 rna ? GO:0001650 ... Q16540 32812867
    66 6zsc:XV (3.5) BS01 rna ? GO:0003723 ... Q96A35 32812867
    67 6zsc:XW (3.5) BS01 rna ? GO:0003723 ... Q9P0M9 32812867
    68 6zsc:XX (3.5) BS01 rna ? GO:0003723 ... Q13084 32812867
    69 6zsc:XY (3.5) BS01 rna ? GO:0003674 ... Q9HD33 32812867
    70 6zsc:XZ (3.5) BS01 rna ? GO:0003735 ... Q8TCC3 32812867
    71 6zsc:a (3.5) BS01 rna ? GO:0003723 ... Q9Y6G3 32812867
    72 6zsc:b (3.5) BS01 rna ? GO:0003723 ... Q8N983 32812867
    73 6zsc:c (3.5) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 32812867
    74 6zsc:d (3.5) BS01 rna ? GO:0003723 ... Q9BRJ2 32812867
    75 6zsc:f (3.5) BS01 rna ? GO:0005515 ... Q96GC5 32812867
    76 6zsc:f (3.5) BS02 rna ? GO:0005515 ... Q96GC5 32812867
    77 6zsc:g (3.5) BS01 rna ? GO:0003735 ... Q13405 32812867
    78 6zsc:i (3.5) BS01 rna ? GO:0003735 ... Q4U2R6 32812867
    79 6zsc:j (3.5) BS01 rna ? GO:0003735 ... Q86TS9 32812867
    80 6zsc:l (3.5) BS01 rna ? GO:0003723 ... Q6P161 32812867
    81 6zsc:m (3.5) BS01 rna ? GO:0003735 ... Q7Z7F7 32812867
    82 6zsc:o (3.5) BS01 rna ? GO:0003735 ... Q9BQC6 32812867
    83 6zsc:q (3.5) BS01 rna ? GO:0005515 ... Q8TAE8 32812867
    84 6zsc:q (3.5) BS02 rna ? GO:0005515 ... Q8TAE8 32812867
    85 6zsc:r (3.5) BS01 rna ? GO:0003735 ... Q9NVS2 32812867
    86 6zsc:s (3.5) BS01 rna ? GO:0003723 ... Q9NP92 32812867
    87 6zsc:t1 (3.5) BS01 peptide ? GO:0003723 ... P52815 32812867
    88 6zsc:t3 (3.5) BS01 peptide ? GO:0003723 ... P52815 32812867
    89 6zsc:t3 (3.5) BS02 peptide ? GO:0003723 ... P52815 32812867
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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