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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zqa:CD (4.4) BS01 rna ? GO:0000154 ... Q12460 32943521
    2 6zqa:CE (4.4) BS01 rna ? GO:0000447 ... Q12499 32943521
    3 6zqa:CE (4.4) BS02 rna ? GO:0000447 ... Q12499 32943521
    4 6zqa:CF (4.4) BS01 rna ? GO:0000245 ... P39990 32943521
    5 6zqa:CI (4.4) BS01 rna ? GO:0003723 ... P32899 32943521
    6 6zqa:CI (4.4) BS02 rna ? GO:0003723 ... P32899 32943521
    7 6zqa:CJ (4.4) BS01 rna ? GO:0005515 ... P53941 32943521
    8 6zqa:CK (4.4) BS01 rna ? GO:0000447 ... P47083 32943521
    9 6zqa:CL (4.4) BS01 rna ? GO:0000462 ... Q08965 32943521
    10 6zqa:CL (4.4) BS02 rna ? GO:0000462 ... Q08965 32943521
    11 6zqa:CL (4.4) BS03 GTP ? GO:0000462 ... Q08965 32943521
    12 6zqa:CM (4.4) BS01 rna ? GO:0000447 ... Q08096 32943521
    13 6zqa:CN (4.4) BS01 rna ? GO:0000028 ... P25368 32943521
    14 6zqa:DA (4.4) BS01 rna ? GO:0000462 ... P33442 32943521
    15 6zqa:DF (4.4) BS01 rna ? GO:0000028 ... P26783 32943521
    16 6zqa:DH (4.4) BS01 rna ? GO:0002181 ... P26786 32943521
    17 6zqa:DJ (4.4) BS01 rna ? GO:0000462 ... O13516 32943521
    18 6zqa:DN (4.4) BS01 rna ? GO:0000462 ... P05756 32943521
    19 6zqa:DO (4.4) BS01 rna ? GO:0000028 ... P06367 32943521
    20 6zqa:DQ (4.4) BS01 rna ? GO:0000462 ... P0CX51 32943521
    21 6zqa:DQ (4.4) BS02 rna ? GO:0000462 ... P0CX51 32943521
    22 6zqa:DW (4.4) BS01 rna ? GO:0002181 ... P0C0W1 32943521
    23 6zqa:DX (4.4) BS01 rna ? GO:0000462 ... P0CX29 32943521
    24 6zqa:Db (4.4) BS01 rna ? GO:0000028 ... P35997 32943521
    25 6zqa:Dc (4.4) BS01 rna ? GO:0000028 ... Q3E7X9 32943521
    26 6zqa:JG (4.4) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943521
    27 6zqa:JH (4.4) BS01 rna ? GO:0000447 ... P38333 32943521
    28 6zqa:JJ (4.4) BS01 rna ? GO:0000056 ... Q99216 32943521
    29 6zqa:JM (4.4) BS01 rna ? GO:0000447 ... Q12035 32943521
    30 6zqa:JM (4.4) BS02 rna ? GO:0000447 ... Q12035 32943521
    31 6zqa:JN (4.4) BS01 rna ? GO:0000462 ... P40546 32943521
    32 6zqa:JN (4.4) BS02 rna ? GO:0000462 ... P40546 32943521
    33 6zqa:JO (4.4) BS01 rna ? GO:0000447 ... P25586 32943521
    34 6zqa:JP (4.4) BS01 rna ? GO:0000462 ... P33750 32943521
    35 6zqa:JP (4.4) BS02 rna ? GO:0000462 ... P33750 32943521
    36 6zqa:JP (4.4) BS03 rna ? GO:0000462 ... P33750 32943521
    37 6zqa:JQ (4.4) BS01 rna ? GO:0003674 ... P40470 32943521
    38 6zqa:UA (4.4) BS01 rna ? GO:0000028 ... P25635 32943521
    39 6zqa:UA (4.4) BS02 rna ? GO:0000028 ... P25635 32943521
    40 6zqa:UB (4.4) BS01 rna ? GO:0000028 ... Q99207 32943521
    41 6zqa:UB (4.4) BS02 rna ? GO:0000028 ... Q99207 32943521
    42 6zqa:UC (4.4) BS01 rna ? GO:0000447 ... Q12136 32943521
    43 6zqa:UD (4.4) BS01 rna ? GO:0000462 ... Q06679 32943521
    44 6zqa:UE (4.4) BS01 rna ? GO:0000462 ... Q04177 32943521
    45 6zqa:UF (4.4) BS01 rna ? GO:0000447 ... Q02354 32943521
    46 6zqa:UG (4.4) BS01 rna ? GO:0000447 ... P40055 32943521
    47 6zqa:UG (4.4) BS02 rna ? GO:0000447 ... P40055 32943521
    48 6zqa:UK (4.4) BS01 rna ? GO:0000447 ... P34247 32943521
    49 6zqa:UK (4.4) BS02 rna ? GO:0000447 ... P34247 32943521
    50 6zqa:UL (4.4) BS01 rna ? GO:0000447 ... Q12220 32943521
    51 6zqa:UM (4.4) BS01 rna ? GO:0000447 ... Q05946 32943521
    52 6zqa:UN (4.4) BS01 rna ? GO:0000447 ... Q04500 32943521
    53 6zqa:UO (4.4) BS01 rna ? GO:0000462 ... Q04305 32943521
    54 6zqa:UP (4.4) BS01 rna ? GO:0000447 ... Q08492 32943521
    55 6zqa:UQ (4.4) BS01 rna ? GO:0000462 ... Q02931 32943521
    56 6zqa:UR (4.4) BS01 rna ? GO:0000292 ... P40362 32943521
    57 6zqa:UU (4.4) BS01 rna ? GO:0003674 ... Q06078 32943521
    58 6zqa:UU (4.4) BS02 rna ? GO:0003674 ... Q06078 32943521
    59 6zqa:UZ (4.4) BS01 rna ? GO:0000462 ... P36144 32943521
    60 6zqa:UZ (4.4) BS02 rna ? GO:0000462 ... P36144 32943521
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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