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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zol:D (2.8) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32908316
    2 6zol:F (2.8) BS01 rna ? GO:0000028 ... P46782 32908316
    3 6zol:F (2.8) BS02 MG ? GO:0000028 ... P46782 32908316
    4 6zol:K (2.8) BS01 rna ? GO:0002181 ... P46783 32908316
    5 6zol:M (2.8) BS01 rna ? GO:0002181 ... P25398 32908316
    6 6zol:P (2.8) BS01 rna ? GO:0000028 ... P62841 32908316
    7 6zol:Q (2.8) BS01 rna ? GO:0000462 ... P62249 32908316
    8 6zol:R (2.8) BS01 rna ? GO:0002181 ... P08708 32908316
    9 6zol:S (2.8) BS01 rna ? GO:0002181 ... P62269 32908316
    10 6zol:S (2.8) BS02 MG ? GO:0002181 ... P62269 32908316
    11 6zol:S (2.8) BS03 MG ? GO:0002181 ... P62269 32908316
    12 6zol:T (2.8) BS01 rna ? GO:0000028 ... P39019 32908316
    13 6zol:U (2.8) BS01 rna ? GO:0002181 ... P60866 32908316
    14 6zol:Z (2.8) BS01 rna ? GO:0002181 ... P62851 32908316
    15 6zol:c (2.8) BS01 rna ? GO:0003735 ... P62857 32908316
    16 6zol:d (2.8) BS01 rna ? GO:0002181 ... P62273 32908316
    17 6zol:d (2.8) BS02 ZN ? GO:0002181 ... P62273 32908316
    18 6zol:f (2.8) BS01 rna ? GO:0003735 ... P62979 32908316
    19 6zol:f (2.8) BS02 ZN ? GO:0003735 ... P62979 32908316
    20 6zol:g (2.8) BS01 rna ? GO:0001891 ... P63244 32908316
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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