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BioLiP
Download all results in tab-seperated text for 41 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zoj:A (2.8) BS01 rna ? GO:0000028 ... P08865 32908316
    2 6zoj:B (2.8) BS01 rna ? GO:0002181 ... P61247 32908316
    3 6zoj:C (2.8) BS01 rna ? GO:0002181 ... P15880 32908316
    4 6zoj:D (2.8) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32908316
    5 6zoj:E (2.8) BS01 rna ? GO:0002181 ... P62701 32908316
    6 6zoj:F (2.8) BS01 rna ? GO:0000028 ... P46782 32908316
    7 6zoj:F (2.8) BS02 MG ? GO:0000028 ... P46782 32908316
    8 6zoj:G (2.8) BS01 rna ? GO:0000082 ... P62753 32908316
    9 6zoj:H (2.8) BS01 rna ? GO:0001843 ... P62081 32908316
    10 6zoj:I (2.8) BS01 rna ? GO:0000462 ... P62241 32908316
    11 6zoj:J (2.8) BS01 rna ? GO:0002181 ... P46781 32908316
    12 6zoj:K (2.8) BS01 rna ? GO:0002181 ... P46783 32908316
    13 6zoj:L (2.8) BS01 rna ? GO:0002181 ... P62280 32908316
    14 6zoj:L (2.8) BS02 MG ? GO:0002181 ... P62280 32908316
    15 6zoj:M (2.8) BS01 rna ? GO:0002181 ... P25398 32908316
    16 6zoj:N (2.8) BS01 rna ? GO:0002181 ... P62277 32908316
    17 6zoj:O (2.8) BS01 rna ? GO:0000028 ... P62263 32908316
    18 6zoj:O (2.8) BS02 MG ? GO:0000028 ... P62263 32908316
    19 6zoj:P (2.8) BS01 rna ? GO:0000028 ... P62841 32908316
    20 6zoj:Q (2.8) BS01 rna ? GO:0000462 ... P62249 32908316
    21 6zoj:R (2.8) BS01 rna ? GO:0002181 ... P08708 32908316
    22 6zoj:S (2.8) BS01 rna ? GO:0002181 ... P62269 32908316
    23 6zoj:S (2.8) BS02 MG ? GO:0002181 ... P62269 32908316
    24 6zoj:S (2.8) BS03 MG ? GO:0002181 ... P62269 32908316
    25 6zoj:T (2.8) BS01 rna ? GO:0000028 ... P39019 32908316
    26 6zoj:U (2.8) BS01 rna ? GO:0002181 ... P60866 32908316
    27 6zoj:W (2.8) BS01 rna ? GO:0002181 ... P62244 32908316
    28 6zoj:X (2.8) BS01 rna ? GO:0002181 ... P62266 32908316
    29 6zoj:Y (2.8) BS01 rna ? GO:0002181 ... P62847 32908316
    30 6zoj:Z (2.8) BS01 rna ? GO:0002181 ... P62851 32908316
    31 6zoj:a (2.8) BS01 rna ? GO:0003735 ... P62854 32908316
    32 6zoj:a (2.8) BS02 ZN ? GO:0003735 ... P62854 32908316
    33 6zoj:b (2.8) BS01 rna ? GO:0000028 ... P42677 32908316
    34 6zoj:c (2.8) BS01 rna ? GO:0003735 ... P62857 32908316
    35 6zoj:d (2.8) BS01 rna ? GO:0002181 ... P62273 32908316
    36 6zoj:d (2.8) BS02 ZN ? GO:0002181 ... P62273 32908316
    37 6zoj:e (2.8) BS01 rna ? GO:0003735 ... P62861 32908316
    38 6zoj:f (2.8) BS01 rna ? GO:0003735 ... P62979 32908316
    39 6zoj:f (2.8) BS02 ZN ? GO:0003735 ... P62979 32908316
    40 6zoj:g (2.8) BS01 rna ? GO:0001891 ... P63244 32908316
    41 6zoj:j (2.8) BS01 rna 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 32908316
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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