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BioLiP
Download all results in tab-seperated text for 114 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zmi:CA (2.6) BS01 rna ? GO:0003676 ... Q9UQ80 32680882
    2 6zmi:CE (2.6) BS01 rna ? GO:0000122 ... Q9NX58 32680882
    3 6zmi:LA (2.6) BS01 rna ? GO:0002181 ... P62917 32680882
    4 6zmi:LA (2.6) BS02 rna ? GO:0002181 ... P62917 32680882
    5 6zmi:LA (2.6) BS03 MG ? GO:0002181 ... P62917 32680882
    6 6zmi:LB (2.6) BS01 rna ? GO:0002181 ... P39023 32680882
    7 6zmi:LC (2.6) BS01 rna ? GO:0002181 ... P36578 32680882
    8 6zmi:LC (2.6) BS02 rna ? GO:0002181 ... P36578 32680882
    9 6zmi:LD (2.6) BS01 rna ? GO:0000027 ... P46777 32680882
    10 6zmi:LD (2.6) BS02 rna ? GO:0000027 ... P46777 32680882
    11 6zmi:LE (2.6) BS01 rna ? GO:0000027 ... Q02878 32680882
    12 6zmi:LF (2.6) BS01 rna ? GO:0000463 ... P18124 32680882
    13 6zmi:LF (2.6) BS02 rna ? GO:0000463 ... P18124 32680882
    14 6zmi:LG (2.6) BS01 rna ? GO:0000470 ... P62424 32680882
    15 6zmi:LG (2.6) BS02 rna ? GO:0000470 ... P62424 32680882
    16 6zmi:LH (2.6) BS01 rna ? GO:0002181 ... P32969 32680882
    17 6zmi:LI (2.6) BS01 rna ? GO:0000027 ... Q96L21 32680882
    18 6zmi:LI (2.6) BS02 rna ? GO:0000027 ... Q96L21 32680882
    19 6zmi:LJ (2.6) BS01 rna ? GO:0000027 ... P62913 32680882
    20 6zmi:LJ (2.6) BS02 rna ? GO:0000027 ... P62913 32680882
    21 6zmi:LL (2.6) BS01 rna ? GO:0001824 ... P26373 32680882
    22 6zmi:LL (2.6) BS02 rna ? GO:0001824 ... P26373 32680882
    23 6zmi:LM (2.6) BS01 rna ? GO:0002181 ... P50914 32680882
    24 6zmi:LN (2.6) BS01 rna ? GO:0002181 ... P61313 32680882
    25 6zmi:LN (2.6) BS02 rna ? GO:0002181 ... P61313 32680882
    26 6zmi:LO (2.6) BS01 rna ? GO:0002181 ... P40429 32680882
    27 6zmi:LP (2.6) BS01 rna ? GO:0002181 ... P18621 32680882
    28 6zmi:LP (2.6) BS02 rna ? GO:0002181 ... P18621 32680882
    29 6zmi:LQ (2.6) BS01 rna ? GO:0002181 ... Q07020 32680882
    30 6zmi:LR (2.6) BS01 rna ? GO:0002181 ... P84098 32680882
    31 6zmi:LR (2.6) BS02 rna ? GO:0002181 ... P84098 32680882
    32 6zmi:LS (2.6) BS01 rna ? GO:0002181 ... Q02543 32680882
    33 6zmi:LS (2.6) BS02 rna ? GO:0002181 ... Q02543 32680882
    34 6zmi:LT (2.6) BS01 rna ? GO:0002181 ... P46778 32680882
    35 6zmi:LT (2.6) BS02 rna ? GO:0002181 ... P46778 32680882
    36 6zmi:LU (2.6) BS01 rna ? GO:0002181 ... P35268 32680882
    37 6zmi:LV (2.6) BS01 rna ? GO:0000122 ... P62829 32680882
    38 6zmi:LV (2.6) BS02 rna ? GO:0000122 ... P62829 32680882
    39 6zmi:LW (2.6) BS01 rna ? GO:0000027 ... P83731 32680882
    40 6zmi:LW (2.6) BS02 rna ? GO:0000027 ... P83731 32680882
    41 6zmi:LX (2.6) BS01 rna ? GO:0000027 ... P62750 32680882
    42 6zmi:LX (2.6) BS02 rna ? GO:0000027 ... P62750 32680882
    43 6zmi:LY (2.6) BS01 rna ? GO:0002181 ... P61254 32680882
    44 6zmi:LY (2.6) BS02 rna ? GO:0002181 ... P61254 32680882
    45 6zmi:LZ (2.6) BS01 rna ? GO:0002181 ... P61353 32680882
    46 6zmi:La (2.6) BS01 rna ? GO:0002181 ... P46776 32680882
    47 6zmi:Lb (2.6) BS01 rna ? GO:0002181 ... P47914 32680882
    48 6zmi:Lc (2.6) BS01 rna ? GO:0002181 ... P62888 32680882
    49 6zmi:Ld (2.6) BS01 rna ? GO:0002181 ... P62899 32680882
    50 6zmi:Le (2.6) BS01 rna ? GO:0002181 ... P62910 32680882
    51 6zmi:Le (2.6) BS02 MG ? GO:0002181 ... P62910 32680882
    52 6zmi:Lf (2.6) BS01 rna ? GO:0000049 ... P18077 32680882
    53 6zmi:Lg (2.6) BS01 rna ? GO:0002181 ... P49207 32680882
    54 6zmi:Lg (2.6) BS02 ZN ? GO:0002181 ... P49207 32680882
    55 6zmi:Lh (2.6) BS01 rna ? GO:0000463 ... P42766 32680882
    56 6zmi:Lh (2.6) BS02 rna ? GO:0000463 ... P42766 32680882
    57 6zmi:Li (2.6) BS01 rna ? GO:0002181 ... Q9Y3U8 32680882
    58 6zmi:Lj (2.6) BS01 rna ? GO:0002181 ... P61927 32680882
    59 6zmi:Lj (2.6) BS02 rna ? GO:0002181 ... P61927 32680882
    60 6zmi:Lj (2.6) BS03 ZN ? GO:0002181 ... P61927 32680882
    61 6zmi:Lk (2.6) BS01 rna ? GO:0001501 ... P63173 32680882
    62 6zmi:Ll (2.6) BS01 rna ? GO:0002181 ... P62891 32680882
    63 6zmi:Ll (2.6) BS02 rna ? GO:0002181 ... P62891 32680882
    64 6zmi:Lm (2.6) BS01 rna ? GO:0002181 ... P62987 32680882
    65 6zmi:Lm (2.6) BS02 ZN ? GO:0002181 ... P62987 32680882
    66 6zmi:Lo (2.6) BS01 rna ? GO:0002181 ... P83881 32680882
    67 6zmi:Lo (2.6) BS02 rna ? GO:0002181 ... P83881 32680882
    68 6zmi:Lo (2.6) BS03 ZN ? GO:0002181 ... P83881 32680882
    69 6zmi:Lp (2.6) BS01 rna ? GO:0002181 ... P61513 32680882
    70 6zmi:Lp (2.6) BS02 ZN ? GO:0002181 ... P61513 32680882
    71 6zmi:Lr (2.6) BS01 rna ? GO:0002181 ... P46779 32680882
    72 6zmi:Ls (2.6) BS01 rna ? GO:0000027 ... P05388 32680882
    73 6zmi:Lt (2.6) BS01 rna ? GO:0002181 ... P30050 32680882
    74 6zmi:Lz (2.6) BS01 rna ? GO:0002181 ... P62906 32680882
    75 6zmi:Lz (2.6) BS02 rna ? GO:0002181 ... P62906 32680882
    76 6zmi:SA (2.6) BS01 rna ? GO:0000028 ... P08865 32680882
    77 6zmi:SB (2.6) BS01 rna ? GO:0002181 ... P61247 32680882
    78 6zmi:SC (2.6) BS01 rna ? GO:0002181 ... P15880 32680882
    79 6zmi:SD (2.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32680882
    80 6zmi:SE (2.6) BS01 rna ? GO:0002181 ... P62701 32680882
    81 6zmi:SF (2.6) BS01 rna ? GO:0000028 ... P46782 32680882
    82 6zmi:SF (2.6) BS02 rna ? GO:0000028 ... P46782 32680882
    83 6zmi:SG (2.6) BS01 rna ? GO:0000082 ... P62753 32680882
    84 6zmi:SH (2.6) BS01 rna ? GO:0001843 ... P62081 32680882
    85 6zmi:SI (2.6) BS01 rna ? GO:0000462 ... P62241 32680882
    86 6zmi:SI (2.6) BS02 rna ? GO:0000462 ... P62241 32680882
    87 6zmi:SJ (2.6) BS01 rna ? GO:0002181 ... P46781 32680882
    88 6zmi:SK (2.6) BS01 rna ? GO:0002181 ... P46783 32680882
    89 6zmi:SL (2.6) BS01 rna ? GO:0002181 ... P62280 32680882
    90 6zmi:SM (2.6) BS01 rna ? GO:0002181 ... P25398 32680882
    91 6zmi:SN (2.6) BS01 rna ? GO:0002181 ... P62277 32680882
    92 6zmi:SN (2.6) BS02 rna ? GO:0002181 ... P62277 32680882
    93 6zmi:SO (2.6) BS01 rna ? GO:0000028 ... P62263 32680882
    94 6zmi:SP (2.6) BS01 rna ? GO:0000028 ... P62841 32680882
    95 6zmi:SQ (2.6) BS01 rna ? GO:0000462 ... P62249 32680882
    96 6zmi:SR (2.6) BS01 rna ? GO:0002181 ... P08708 32680882
    97 6zmi:SS (2.6) BS01 rna ? GO:0002181 ... P62269 32680882
    98 6zmi:ST (2.6) BS01 rna ? GO:0000028 ... P39019 32680882
    99 6zmi:SU (2.6) BS01 rna ? GO:0002181 ... P60866 32680882
    100 6zmi:SW (2.6) BS01 rna ? GO:0002181 ... P62244 32680882
    101 6zmi:SX (2.6) BS01 rna ? GO:0002181 ... P62266 32680882
    102 6zmi:SY (2.6) BS01 rna ? GO:0002181 ... P62847 32680882
    103 6zmi:SZ (2.6) BS01 rna ? GO:0002181 ... P62851 32680882
    104 6zmi:Sa (2.6) BS01 rna ? GO:0002181 ... P62854 32680882
    105 6zmi:Sa (2.6) BS02 ZN ? GO:0002181 ... P62854 32680882
    106 6zmi:Sb (2.6) BS01 rna ? GO:0000028 ... P42677 32680882
    107 6zmi:Sc (2.6) BS01 rna ? GO:0000028 ... P62857 32680882
    108 6zmi:Sd (2.6) BS01 rna ? GO:0002181 ... P62273 32680882
    109 6zmi:Sd (2.6) BS02 ZN ? GO:0002181 ... P62273 32680882
    110 6zmi:Se (2.6) BS01 rna ? GO:0003735 ... P62861 32680882
    111 6zmi:Sf (2.6) BS01 rna ? GO:0002181 ... P62979 32680882
    112 6zmi:Sf (2.6) BS02 ZN ? GO:0002181 ... P62979 32680882
    113 6zmi:Sg (2.6) BS01 rna ? GO:0001891 ... P63244 32680882
    114 6zmi:i (2.6) BS01 rna 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 32680882
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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