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BioLiP
Download all results in tab-seperated text for 223 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zj3:L1 (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    2 6zj3:L1 (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    3 6zj3:L1 (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    4 6zj3:L1 (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    5 6zj3:L2 (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    6 6zj3:L2 (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    7 6zj3:L2 (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    8 6zj3:L2 (3.15) BS04 ZN N/A GO:0003735 ... N/A 33091122
    9 6zj3:L3 (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    10 6zj3:L3 (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    11 6zj3:L4 (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    12 6zj3:L4 (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    13 6zj3:L4 (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    14 6zj3:L4 (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    15 6zj3:L4 (3.15) BS05 ZN N/A GO:0003735 ... N/A 33091122
    16 6zj3:L5 (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    17 6zj3:L5 (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    18 6zj3:L5 (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    19 6zj3:L5 (3.15) BS04 ZN N/A GO:0003735 ... N/A 33091122
    20 6zj3:L6 (3.15) BS01 rna N/A N/A N/A 33091122
    21 6zj3:L6 (3.15) BS02 rna N/A N/A N/A 33091122
    22 6zj3:L7 (3.15) BS01 rna N/A N/A N/A 33091122
    23 6zj3:L7 (3.15) BS02 rna N/A N/A N/A 33091122
    24 6zj3:LP (3.15) BS01 rna N/A GO:0003723 ... N/A 33091122
    25 6zj3:LP (3.15) BS02 rna N/A GO:0003723 ... N/A 33091122
    26 6zj3:LP (3.15) BS03 rna N/A GO:0003723 ... N/A 33091122
    27 6zj3:LP (3.15) BS04 rna N/A GO:0003723 ... N/A 33091122
    28 6zj3:LP (3.15) BS05 rna N/A GO:0003723 ... N/A 33091122
    29 6zj3:LQ (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    30 6zj3:LQ (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    31 6zj3:LQ (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    32 6zj3:LQ (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    33 6zj3:LQ (3.15) BS05 rna N/A GO:0003735 ... N/A 33091122
    34 6zj3:LQ (3.15) BS06 rna N/A GO:0003735 ... N/A 33091122
    35 6zj3:LQ (3.15) BS07 rna N/A GO:0003735 ... N/A 33091122
    36 6zj3:LR (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    37 6zj3:LR (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    38 6zj3:LR (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    39 6zj3:LR (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    40 6zj3:LR (3.15) BS05 rna N/A GO:0003735 ... N/A 33091122
    41 6zj3:LR (3.15) BS06 rna N/A GO:0003735 ... N/A 33091122
    42 6zj3:LS (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    43 6zj3:LS (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    44 6zj3:LS (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    45 6zj3:LS (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    46 6zj3:LT (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    47 6zj3:LT (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    48 6zj3:LT (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    49 6zj3:LT (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    50 6zj3:LU (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    51 6zj3:LU (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    52 6zj3:LU (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    53 6zj3:LU (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    54 6zj3:LV (3.15) BS01 rna ? GO:0000470 ... Q4VH13 33091122
    55 6zj3:LV (3.15) BS02 rna ? GO:0000470 ... Q4VH13 33091122
    56 6zj3:LV (3.15) BS03 rna ? GO:0000470 ... Q4VH13 33091122
    57 6zj3:LV (3.15) BS04 rna ? GO:0000470 ... Q4VH13 33091122
    58 6zj3:LV (3.15) BS05 rna ? GO:0000470 ... Q4VH13 33091122
    59 6zj3:LW (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    60 6zj3:LW (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    61 6zj3:LW (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    62 6zj3:LW (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    63 6zj3:LW (3.15) BS05 rna N/A GO:0003735 ... N/A 33091122
    64 6zj3:LW (3.15) BS06 rna N/A GO:0003735 ... N/A 33091122
    65 6zj3:LW (3.15) BS07 rna N/A GO:0003735 ... N/A 33091122
    66 6zj3:LX (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    67 6zj3:LX (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    68 6zj3:LX (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    69 6zj3:LX (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    70 6zj3:LX (3.15) BS05 rna N/A GO:0003735 ... N/A 33091122
    71 6zj3:LY (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    72 6zj3:LY (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    73 6zj3:LY (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    74 6zj3:LZ (3.15) BS01 rna N/A GO:0003723 ... N/A 33091122
    75 6zj3:LZ (3.15) BS02 rna N/A GO:0003723 ... N/A 33091122
    76 6zj3:LZ (3.15) BS03 rna N/A GO:0003723 ... N/A 33091122
    77 6zj3:LZ (3.15) BS04 rna N/A GO:0003723 ... N/A 33091122
    78 6zj3:La (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    79 6zj3:La (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    80 6zj3:La (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    81 6zj3:La (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    82 6zj3:La (3.15) BS05 rna N/A GO:0003735 ... N/A 33091122
    83 6zj3:Lb (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    84 6zj3:Lb (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    85 6zj3:Lb (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    86 6zj3:Lb (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    87 6zj3:Lb (3.15) BS05 rna N/A GO:0003735 ... N/A 33091122
    88 6zj3:Lb (3.15) BS06 rna N/A GO:0003735 ... N/A 33091122
    89 6zj3:Lb (3.15) BS07 rna N/A GO:0003735 ... N/A 33091122
    90 6zj3:Lc (3.15) BS01 rna ? GO:0000027 ... Q39724 33091122
    91 6zj3:Lc (3.15) BS02 rna ? GO:0000027 ... Q39724 33091122
    92 6zj3:Lc (3.15) BS03 rna ? GO:0000027 ... Q39724 33091122
    93 6zj3:Lc (3.15) BS04 rna ? GO:0000027 ... Q39724 33091122
    94 6zj3:Ld (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    95 6zj3:Ld (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    96 6zj3:Ld (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    97 6zj3:Le (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    98 6zj3:Le (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    99 6zj3:Le (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    100 6zj3:Le (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    101 6zj3:Lf (3.15) BS01 rna N/A GO:0003723 ... N/A 33091122
    102 6zj3:Lf (3.15) BS02 rna N/A GO:0003723 ... N/A 33091122
    103 6zj3:Lf (3.15) BS03 rna N/A GO:0003723 ... N/A 33091122
    104 6zj3:Lf (3.15) BS04 rna N/A GO:0003723 ... N/A 33091122
    105 6zj3:Lf (3.15) BS05 rna N/A GO:0003723 ... N/A 33091122
    106 6zj3:Lf (3.15) BS06 rna N/A GO:0003723 ... N/A 33091122
    107 6zj3:Lg (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    108 6zj3:Lg (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    109 6zj3:Lg (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    110 6zj3:Lg (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    111 6zj3:Lh (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    112 6zj3:Lh (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    113 6zj3:Lh (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    114 6zj3:Lh (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    115 6zj3:Li (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    116 6zj3:Li (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    117 6zj3:Li (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    118 6zj3:Li (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    119 6zj3:Li (3.15) BS05 rna N/A GO:0003735 ... N/A 33091122
    120 6zj3:Li (3.15) BS06 rna N/A GO:0003735 ... N/A 33091122
    121 6zj3:Li (3.15) BS07 rna N/A GO:0003735 ... N/A 33091122
    122 6zj3:Li (3.15) BS08 rna N/A GO:0003735 ... N/A 33091122
    123 6zj3:Lj (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    124 6zj3:Lk (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    125 6zj3:Lk (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    126 6zj3:Lk (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    127 6zj3:Lk (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    128 6zj3:Lk (3.15) BS05 rna N/A GO:0003735 ... N/A 33091122
    129 6zj3:Lk (3.15) BS06 rna N/A GO:0003735 ... N/A 33091122
    130 6zj3:Ll (3.15) BS01 rna N/A GO:0003723 ... N/A 33091122
    131 6zj3:Ll (3.15) BS02 rna N/A GO:0003723 ... N/A 33091122
    132 6zj3:Lm (3.15) BS01 rna N/A N/A N/A 33091122
    133 6zj3:Lm (3.15) BS02 rna N/A N/A N/A 33091122
    134 6zj3:Lm (3.15) BS03 rna N/A N/A N/A 33091122
    135 6zj3:Ln (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    136 6zj3:Ln (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    137 6zj3:Ln (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    138 6zj3:Lo (3.15) BS01 rna N/A N/A N/A 33091122
    139 6zj3:Lp (3.15) BS01 rna N/A GO:0000463 ... N/A 33091122
    140 6zj3:Lp (3.15) BS02 rna N/A GO:0000463 ... N/A 33091122
    141 6zj3:Lp (3.15) BS03 rna N/A GO:0000463 ... N/A 33091122
    142 6zj3:Lq (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    143 6zj3:Lq (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    144 6zj3:Lq (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    145 6zj3:Lr (3.15) BS01 rna N/A GO:0000463 ... N/A 33091122
    146 6zj3:Lr (3.15) BS02 rna N/A GO:0000463 ... N/A 33091122
    147 6zj3:Lr (3.15) BS03 rna N/A GO:0000463 ... N/A 33091122
    148 6zj3:Lr (3.15) BS04 rna N/A GO:0000463 ... N/A 33091122
    149 6zj3:Ls (3.15) BS01 rna N/A GO:0003723 ... N/A 33091122
    150 6zj3:Ls (3.15) BS02 rna N/A GO:0003723 ... N/A 33091122
    151 6zj3:Lt (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    152 6zj3:Lt (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    153 6zj3:Lt (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    154 6zj3:Lt (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    155 6zj3:Lt (3.15) BS05 rna N/A GO:0003735 ... N/A 33091122
    156 6zj3:Lu (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    157 6zj3:Lu (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    158 6zj3:Lu (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    159 6zj3:Lv (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    160 6zj3:Lv (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    161 6zj3:Lv (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    162 6zj3:Lv (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    163 6zj3:Lv (3.15) BS05 rna N/A GO:0003735 ... N/A 33091122
    164 6zj3:Lv (3.15) BS06 rna N/A GO:0003735 ... N/A 33091122
    165 6zj3:Lw (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    166 6zj3:Lw (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    167 6zj3:Lw (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    168 6zj3:Lw (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    169 6zj3:Lw (3.15) BS05 rna N/A GO:0003735 ... N/A 33091122
    170 6zj3:Lx (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    171 6zj3:Lx (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    172 6zj3:Lx (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    173 6zj3:Ly (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    174 6zj3:Ly (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    175 6zj3:Ly (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    176 6zj3:Ly (3.15) BS04 rna N/A GO:0003735 ... N/A 33091122
    177 6zj3:Ly (3.15) BS05 rna N/A GO:0003735 ... N/A 33091122
    178 6zj3:Ly (3.15) BS06 rna N/A GO:0003735 ... N/A 33091122
    179 6zj3:Ly (3.15) BS07 ZN N/A GO:0003735 ... N/A 33091122
    180 6zj3:Lz (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    181 6zj3:SA (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    182 6zj3:SA (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    183 6zj3:SA (3.15) BS03 rna N/A GO:0003735 ... N/A 33091122
    184 6zj3:SB (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    185 6zj3:SC (3.15) BS01 rna N/A GO:0003723 ... N/A 33091122
    186 6zj3:SD (3.15) BS01 rna N/A GO:0003723 ... N/A 33091122
    187 6zj3:SE (3.15) BS01 rna N/A GO:0003723 ... N/A 33091122
    188 6zj3:SF (3.15) BS01 rna N/A GO:0003723 ... N/A 33091122
    189 6zj3:SG (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    190 6zj3:SH (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    191 6zj3:SH (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    192 6zj3:SI (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    193 6zj3:SJ (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    194 6zj3:SK (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    195 6zj3:SL (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    196 6zj3:SM (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    197 6zj3:SN (3.15) BS01 rna N/A N/A N/A 33091122
    198 6zj3:SO (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    199 6zj3:SO (3.15) BS02 rna N/A GO:0003735 ... N/A 33091122
    200 6zj3:SP (3.15) BS01 rna N/A GO:0003735 ... N/A 33091122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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