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BioLiP
Download all results in tab-seperated text for 114 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6z6n:CA (2.9) BS01 rna ? GO:0003676 ... Q9UQ80 32687489
    2 6z6n:CB (2.9) BS01 rna 3.6.5.- GO:0002244 ... P13639 32687489
    3 6z6n:CB (2.9) BS02 rna 3.6.5.- GO:0002244 ... P13639 32687489
    4 6z6n:CD (2.9) BS01 rna ? GO:0003723 ... Q8NC51 32687489
    5 6z6n:LA (2.9) BS01 rna ? GO:0002181 ... P62917 32687489
    6 6z6n:LA (2.9) BS02 MG ? GO:0002181 ... P62917 32687489
    7 6z6n:LB (2.9) BS01 rna ? GO:0002181 ... P39023 32687489
    8 6z6n:LC (2.9) BS01 rna ? GO:0002181 ... P36578 32687489
    9 6z6n:LC (2.9) BS02 rna ? GO:0002181 ... P36578 32687489
    10 6z6n:LD (2.9) BS01 rna ? GO:0000027 ... P46777 32687489
    11 6z6n:LD (2.9) BS02 rna ? GO:0000027 ... P46777 32687489
    12 6z6n:LE (2.9) BS01 rna ? GO:0000027 ... Q02878 32687489
    13 6z6n:LF (2.9) BS01 rna ? GO:0000463 ... P18124 32687489
    14 6z6n:LF (2.9) BS02 rna ? GO:0000463 ... P18124 32687489
    15 6z6n:LG (2.9) BS01 rna ? GO:0000470 ... P62424 32687489
    16 6z6n:LG (2.9) BS02 rna ? GO:0000470 ... P62424 32687489
    17 6z6n:LH (2.9) BS01 rna ? GO:0002181 ... P32969 32687489
    18 6z6n:LI (2.9) BS01 rna ? GO:0000027 ... Q96L21 32687489
    19 6z6n:LI (2.9) BS02 rna ? GO:0000027 ... Q96L21 32687489
    20 6z6n:LJ (2.9) BS01 rna ? GO:0000027 ... P62913 32687489
    21 6z6n:LJ (2.9) BS02 rna ? GO:0000027 ... P62913 32687489
    22 6z6n:LL (2.9) BS01 rna ? GO:0001824 ... P26373 32687489
    23 6z6n:LL (2.9) BS02 rna ? GO:0001824 ... P26373 32687489
    24 6z6n:LM (2.9) BS01 rna ? GO:0002181 ... P50914 32687489
    25 6z6n:LN (2.9) BS01 rna ? GO:0002181 ... P61313 32687489
    26 6z6n:LN (2.9) BS02 rna ? GO:0002181 ... P61313 32687489
    27 6z6n:LO (2.9) BS01 rna ? GO:0002181 ... P40429 32687489
    28 6z6n:LP (2.9) BS01 rna ? GO:0002181 ... P18621 32687489
    29 6z6n:LP (2.9) BS02 rna ? GO:0002181 ... P18621 32687489
    30 6z6n:LQ (2.9) BS01 rna ? GO:0002181 ... Q07020 32687489
    31 6z6n:LR (2.9) BS01 rna ? GO:0002181 ... P84098 32687489
    32 6z6n:LR (2.9) BS02 rna ? GO:0002181 ... P84098 32687489
    33 6z6n:LS (2.9) BS01 rna ? GO:0002181 ... Q02543 32687489
    34 6z6n:LS (2.9) BS02 rna ? GO:0002181 ... Q02543 32687489
    35 6z6n:LT (2.9) BS01 rna ? GO:0002181 ... P46778 32687489
    36 6z6n:LT (2.9) BS02 rna ? GO:0002181 ... P46778 32687489
    37 6z6n:LU (2.9) BS01 rna ? GO:0002181 ... P35268 32687489
    38 6z6n:LV (2.9) BS01 rna ? GO:0000122 ... P62829 32687489
    39 6z6n:LV (2.9) BS02 rna ? GO:0000122 ... P62829 32687489
    40 6z6n:LW (2.9) BS01 rna ? GO:0000027 ... P83731 32687489
    41 6z6n:LW (2.9) BS02 rna ? GO:0000027 ... P83731 32687489
    42 6z6n:LX (2.9) BS01 rna ? GO:0000027 ... P62750 32687489
    43 6z6n:LX (2.9) BS02 rna ? GO:0000027 ... P62750 32687489
    44 6z6n:LY (2.9) BS01 rna ? GO:0002181 ... P61254 32687489
    45 6z6n:LY (2.9) BS02 rna ? GO:0002181 ... P61254 32687489
    46 6z6n:LZ (2.9) BS01 rna ? GO:0002181 ... P61353 32687489
    47 6z6n:La (2.9) BS01 rna ? GO:0002181 ... P46776 32687489
    48 6z6n:Lb (2.9) BS01 rna ? GO:0002181 ... P47914 32687489
    49 6z6n:Lc (2.9) BS01 rna ? GO:0002181 ... P62888 32687489
    50 6z6n:Ld (2.9) BS01 rna ? GO:0002181 ... P62899 32687489
    51 6z6n:Le (2.9) BS01 rna ? GO:0002181 ... P62910 32687489
    52 6z6n:Le (2.9) BS02 MG ? GO:0002181 ... P62910 32687489
    53 6z6n:Lf (2.9) BS01 rna ? GO:0000049 ... P18077 32687489
    54 6z6n:Lg (2.9) BS01 rna ? GO:0002181 ... P49207 32687489
    55 6z6n:Lg (2.9) BS02 MG ? GO:0002181 ... P49207 32687489
    56 6z6n:Lg (2.9) BS03 ZN ? GO:0002181 ... P49207 32687489
    57 6z6n:Lh (2.9) BS01 rna ? GO:0000463 ... P42766 32687489
    58 6z6n:Lh (2.9) BS02 rna ? GO:0000463 ... P42766 32687489
    59 6z6n:Li (2.9) BS01 rna ? GO:0002181 ... Q9Y3U8 32687489
    60 6z6n:Lj (2.9) BS01 rna ? GO:0002181 ... P61927 32687489
    61 6z6n:Lj (2.9) BS02 rna ? GO:0002181 ... P61927 32687489
    62 6z6n:Lj (2.9) BS03 ZN ? GO:0002181 ... P61927 32687489
    63 6z6n:Lk (2.9) BS01 rna ? GO:0001501 ... P63173 32687489
    64 6z6n:Ll (2.9) BS01 rna ? GO:0002181 ... P62891 32687489
    65 6z6n:Ll (2.9) BS02 rna ? GO:0002181 ... P62891 32687489
    66 6z6n:Lm (2.9) BS01 rna ? GO:0002181 ... P62987 32687489
    67 6z6n:Lm (2.9) BS02 ZN ? GO:0002181 ... P62987 32687489
    68 6z6n:Lo (2.9) BS01 rna ? GO:0002181 ... P83881 32687489
    69 6z6n:Lo (2.9) BS02 rna ? GO:0002181 ... P83881 32687489
    70 6z6n:Lo (2.9) BS03 ZN ? GO:0002181 ... P83881 32687489
    71 6z6n:Lp (2.9) BS01 rna ? GO:0002181 ... P61513 32687489
    72 6z6n:Lp (2.9) BS02 ZN ? GO:0002181 ... P61513 32687489
    73 6z6n:Lr (2.9) BS01 rna ? GO:0002181 ... P46779 32687489
    74 6z6n:Lz (2.9) BS01 rna ? GO:0002181 ... P62906 32687489
    75 6z6n:Lz (2.9) BS02 rna ? GO:0002181 ... P62906 32687489
    76 6z6n:SA (2.9) BS01 rna ? GO:0000028 ... P08865 32687489
    77 6z6n:SB (2.9) BS01 rna ? GO:0002181 ... P61247 32687489
    78 6z6n:SB (2.9) BS02 rna ? GO:0002181 ... P61247 32687489
    79 6z6n:SC (2.9) BS01 rna ? GO:0002181 ... P15880 32687489
    80 6z6n:SD (2.9) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32687489
    81 6z6n:SE (2.9) BS01 rna ? GO:0002181 ... P62701 32687489
    82 6z6n:SF (2.9) BS01 rna ? GO:0000028 ... P46782 32687489
    83 6z6n:SF (2.9) BS02 rna ? GO:0000028 ... P46782 32687489
    84 6z6n:SG (2.9) BS01 rna ? GO:0000082 ... P62753 32687489
    85 6z6n:SH (2.9) BS01 rna ? GO:0001843 ... P62081 32687489
    86 6z6n:SI (2.9) BS01 rna ? GO:0000462 ... P62241 32687489
    87 6z6n:SI (2.9) BS02 rna ? GO:0000462 ... P62241 32687489
    88 6z6n:SJ (2.9) BS01 rna ? GO:0002181 ... P46781 32687489
    89 6z6n:SK (2.9) BS01 rna ? GO:0002181 ... P46783 32687489
    90 6z6n:SL (2.9) BS01 rna ? GO:0002181 ... P62280 32687489
    91 6z6n:SM (2.9) BS01 rna ? GO:0002181 ... P25398 32687489
    92 6z6n:SN (2.9) BS01 rna ? GO:0002181 ... P62277 32687489
    93 6z6n:SN (2.9) BS02 rna ? GO:0002181 ... P62277 32687489
    94 6z6n:SO (2.9) BS01 rna ? GO:0000028 ... P62263 32687489
    95 6z6n:SP (2.9) BS01 rna ? GO:0000028 ... P62841 32687489
    96 6z6n:SQ (2.9) BS01 rna ? GO:0000462 ... P62249 32687489
    97 6z6n:SR (2.9) BS01 rna ? GO:0002181 ... P08708 32687489
    98 6z6n:SS (2.9) BS01 rna ? GO:0002181 ... P62269 32687489
    99 6z6n:ST (2.9) BS01 rna ? GO:0000028 ... P39019 32687489
    100 6z6n:SU (2.9) BS01 rna ? GO:0002181 ... P60866 32687489
    101 6z6n:SW (2.9) BS01 rna ? GO:0002181 ... P62244 32687489
    102 6z6n:SX (2.9) BS01 rna ? GO:0002181 ... P62266 32687489
    103 6z6n:SY (2.9) BS01 rna ? GO:0002181 ... P62847 32687489
    104 6z6n:SZ (2.9) BS01 rna ? GO:0002181 ... P62851 32687489
    105 6z6n:Sa (2.9) BS01 rna ? GO:0002181 ... P62854 32687489
    106 6z6n:Sa (2.9) BS02 ZN ? GO:0002181 ... P62854 32687489
    107 6z6n:Sb (2.9) BS01 rna ? GO:0000028 ... P42677 32687489
    108 6z6n:Sc (2.9) BS01 rna ? GO:0000028 ... P62857 32687489
    109 6z6n:Sd (2.9) BS01 rna ? GO:0002181 ... P62273 32687489
    110 6z6n:Sd (2.9) BS02 ZN ? GO:0002181 ... P62273 32687489
    111 6z6n:Se (2.9) BS01 rna ? GO:0003735 ... P62861 32687489
    112 6z6n:Sf (2.9) BS01 rna ? GO:0002181 ... P62979 32687489
    113 6z6n:Sf (2.9) BS02 ZN ? GO:0002181 ... P62979 32687489
    114 6z6n:Sg (2.9) BS01 rna ? GO:0001891 ... P63244 32687489
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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